miRNEST 2.0, an integrative microRNA resource :: BLAST
>48579_gma-miR396b:pmrd
Length = 126
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 109 gaagctcaagaaagctgtgggaaaacatggcaattcagg 147
|||||||||||||||||||||| || |||||||||||||
Sbjct: 86 gaagctcaagaaagctgtgggagaatatggcaattcagg 124
Score = 60.0 bits (30), Expect = 5e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 aagtcttggccatgcttttccacagctttcttgaactt 41
||||| ||| ||||||||||||||||||||||||||||
Sbjct: 4 aagtcctggtcatgcttttccacagctttcttgaactt 41
>54869_vvi-miR396b:pmrd
Length = 108
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 gccatgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||||||
Sbjct: 5 gccatgcttttccacagctttcttgaactt 34
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 gaagctcaagaaagctgtgggaaaacatggc 139
|||| ||||||||||||||||||| ||||||
Sbjct: 76 gaagttcaagaaagctgtgggaaaccatggc 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 12 gccatgcttttccacagctttcttgaactt 41
|||||| ||| |||||||||||||||||||
Sbjct: 106 gccatggtttcccacagctttcttgaactt 77
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 109 gaagctcaagaaagctgtgggaaaacatggca 140
|||| ||||||||||||||| ||| |||||||
Sbjct: 35 gaagttcaagaaagctgtggaaaagcatggca 4
>47009_ath-miR396b:pmrd
Length = 135
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 108 ggaagctcaagaaagctgtgggaaaacatg 137
||||||||||||||||||||||||||||||
Sbjct: 103 ggaagctcaagaaagctgtgggaaaacatg 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 18 cttttccacagctttcttgaactttcttt 46
|||||||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactttcttt 36
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 108 ggaagctcaagaaagctgtgggaaaacatg 137
||||||||||||||||||||||| ||||||
Sbjct: 30 ggaagctcaagaaagctgtgggagaacatg 1
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 108 ggaagctcaagaaagctgtgggaaaacatg 137
||||||||||||||||||||||| ||||||
Sbjct: 30 ggaagctcaagaaagctgtgggagaacatg 1
>51738_ptc-miR396e:pmrd
Length = 145
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 108 ggaagctcaagaaagctgtgggaaaacatgg 138
||||||||||||||||||||||| |||||||
Sbjct: 115 ggaagctcaagaaagctgtgggagaacatgg 145
>51737_ptc-miR396d:pmrd
Length = 154
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 108 ggaagctcaagaaagctgtgggaaaacatgg 138
|||||||||||||||| |||||| |||||||
Sbjct: 124 ggaagctcaagaaagccgtgggagaacatgg 154
>54868_vvi-miR396a:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaact 40
|||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 109 gaagctcaagaaagctgtgggaaaacatggcaa 141
|||||||||||||||||||||| |||||||||
Sbjct: 84 gaagctcaagaaagctgtgggaggacatggcaa 116
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 15 atgcttttccacagctttcttgaactt 41
|||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaactt 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 108 ggaagctcaagaaagctgtgggaaaacat 136
|||||||||||||||| |||||| |||||
Sbjct: 29 ggaagctcaagaaagccgtgggagaacat 1
>48580_gma-miR396c:pmrd
Length = 117
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 atgcttttccacagctttcttgaactt 41
|||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41
>54487_sbi-miR396c:pmrd
Length = 162
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 gccatgcttttccacagctttcttgaactt 41
||||||| ||||||||||||||||||||||
Sbjct: 12 gccatgcctttccacagctttcttgaactt 41
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 12 gccatgcttttccacagctttcttgaactt 41
|||||| |||||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaactt 73
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 107 aggaagctcaagaaagctgtgggaaaacatggc 139
|||||| ||||||||||||||| ||||||||||
Sbjct: 70 aggaagttcaagaaagctgtggaaaaacatggc 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaactt 41
|||||| |||||| ||||||||||||||
Sbjct: 3 catgctattccacggctttcttgaactt 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 107 aggaagctcaagaaagctgtgggaaaacatggca 140
|||||| ||||||||||||||| |||||||||||
Sbjct: 34 aggaagttcaagaaagctgtggaaaaacatggca 1
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 gccatgcttttccacagctttcttgaactt 41
|||||| |||||||||||||||||||||||
Sbjct: 2 gccatgtttttccacagctttcttgaactt 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 14 catgcttttccacagctttcttgaactt 41
|||||| |||||| ||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaactt 74
>48947_osa-miR396c:pmrd
Length = 141
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 gccatgcttttccacagctttcttgaactt 41
||||||| ||||||||||||||||||||||
Sbjct: 2 gccatgcctttccacagctttcttgaactt 31
>48748_mtr-miR396a:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tgcttttccacagctttcttgaactt 41
||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaactt 26
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109 gaagctcaagaaagctgtggga 130
||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtggga 88
>48374_bna-miR396a:pmrd
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactttcttt 46
||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactttcttt 26
>51564_pta-miR396:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 cttttccacagctttcttgaacttt 42
|||||||||||||||||||||||||
Sbjct: 14 cttttccacagctttcttgaacttt 38
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 ccatgcttttccacagctttcttgaacttt 42
||||||||| |||||| |||||||||||||
Sbjct: 111 ccatgctttcccacagttttcttgaacttt 82
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 aagctcaagaaagctgtgggaaaa 133
|||||||||||||| |||||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaa 160
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 aagctcaagaaagctgtgggaaaa 133
|||||||||||||| |||||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaa 163
>55078_zma-miR396g:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaactt 41
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tttccacagctttcttgaactt 41
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>54584_smo-miR396:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacagctttcttgaac 39
||||||||||||| ||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 109 gaagctcaagaaagctgtgggaaa 132
|||| |||||||||||||||||||
Sbjct: 134 gaagttcaagaaagctgtgggaaa 157
>46888_aqc-miR396b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttt 42
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttt 22
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
