miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaacttggtactc 48
|||||||||||||||||||||||||||||| ||||
Sbjct: 1 catgcttttccacggctttcttgaacttggcactc 35
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 140 aagctcaagaaagccgtgggaaaa 163
||||||||||||||||||||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaa 160
>51740_ptc-miR396g:pmrd
Length = 168
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaacttggtactc 48
|||||||||||||||||||||||||||||| ||||
Sbjct: 4 catgcttttccacggctttcttgaacttggcactc 38
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 140 aagctcaagaaagccgtgggaaaacatga 168
|||||||||||||||||||||||| ||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatga 168
>54584_smo-miR396:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaacttggtactct 49
|||||||||||||||||||||||||| |||| ||||
Sbjct: 4 catgcttttccacggctttcttgaacctggtgctct 39
>47009_ath-miR396b:pmrd
Length = 135
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 139 gaagctcaagaaagccgtgggaaaacatga 168
||||||||||||||| ||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtgggaaaacatga 133
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 cttttccacggctttcttgaactt 41
||||||||| ||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactt 31
>51737_ptc-miR396d:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 139 gaagctcaagaaagccgtgggaaaacatg 167
|||||||||||||||||||||| ||||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatg 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>54869_vvi-miR396b:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaactt 34
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 139 gaagctcaagaaagccgtgggaaaacatg 167
||||||||||||||| |||||| ||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaacatg 1
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 139 gaagctcaagaaagccgtgggaaaacat 166
|||||||||||||||||||||| |||||
Sbjct: 28 gaagctcaagaaagccgtgggagaacat 1
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 15 atgcttttccacggctttcttgaactt 41
|||||||||||| ||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaactt 122
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
|||||| |||||||||||||||||||||
Sbjct: 3 catgctattccacggctttcttgaactt 30
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 14 catgcttttccacggctttcttgaactt 41
|||| |||||||| ||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaactt 73
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaactt 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 139 gaagctcaagaaagccgtgggaaaacatg 167
||||||||||||||| |||||| ||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaacatg 1
>51738_ptc-miR396e:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 139 gaagctcaagaaagccgtgggaaaacatg 167
||||||||||||||| |||||| ||||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatg 144
>51736_ptc-miR396c:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 14 catgcttttccacggctttcttgaactt 41
|||||| |||||||||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaactt 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
|||| |||||||| ||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaactt 31
>48579_gma-miR396b:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||||||||||| ||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaactt 41
>54868_vvi-miR396a:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaact 40
||||||||||||| |||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
>48580_gma-miR396c:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 atgcttttccacggctttcttgaactt 41
|||||||||||| ||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaactt 41
>52919_ptc-miRf11097-akr:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 ttttccacggctttcttgaact 40
||||||||||||||||||||||
Sbjct: 114 ttttccacggctttcttgaact 93
>51739_ptc-miR396f:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ttttccacggctttcttgaact 40
||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tgcttttccacggctttcttgaactt 41
||||||||||| ||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaactt 26
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||| ||||||| ||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaactt 41
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 cttttccacggctttcttgaactt 41
||||||||| ||||||||||||||
Sbjct: 14 cttttccacagctttcttgaactt 37
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 catgcttttccacggctttcttgaactt 41
||||| ||||||| ||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaactt 31
