miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48580_gma-miR396c:pmrd
Length = 117
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgacaggactt 140
|||||||||||||||| |||||||||||| |||||||||
Sbjct: 43 agaagttcaagaaagctgtggaaaagcataacaggactt 5
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
>54868_vvi-miR396a:pmrd
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 105 agttcaagaaagccgtggaaaagcatgacagga 137
||||||||||||| |||||||||||||||||||
Sbjct: 33 agttcaagaaagctgtggaaaagcatgacagga 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 10 ttgccatgttattccacagctttcttgaacttctat 45
||||||||| | ||||||||||||||| |||||||
Sbjct: 116 ttgccatgtcctcccacagctttcttgagcttctat 81
>54869_vvi-miR396b:pmrd
Length = 108
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgacagga 137
|||||||||||||||| ||||||||||||| |||||
Sbjct: 36 agaagttcaagaaagctgtggaaaagcatggcagga 1
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 tgccatgttattccacagctttcttgaacttct 43
||||||| | |||||||||||||||||||||||
Sbjct: 4 tgccatgcttttccacagctttcttgaacttct 36
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 23 ccacagctttcttgaacttc 42
||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||||||||||||
Sbjct: 28 aagttcaagaaagccgtggaaaagcatg 1
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
||||||||||||||||||||||| ||||||||
Sbjct: 32 agaagttcaagaaagccgtggaatagcatgac 1
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 12 gccatgttattccacagctttcttgaacttc 42
|||||||| ||||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaacttc 72
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 catgttattccacagctttcttgaacttct 43
|||| |||||||| ||||||||||||||||
Sbjct: 3 catgctattccacggctttcttgaacttct 32
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 103 gaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||| |||||||| ||||
Sbjct: 72 gaagttcaagaaagctgtggaaaaacatg 100
>51740_ptc-miR396g:pmrd
Length = 168
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaagcatg 4
>51738_ptc-miR396e:pmrd
Length = 145
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||||||||||
Sbjct: 33 agaagttcaagaaagctgtggaaaagcatgac 2
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>51736_ptc-miR396c:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tgccatgttattccacagctttcttgaacttc 42
||||||||| ||||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaacttc 32
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 102 agaagttcaagaaagccgtggaaaagcatga 132
||||||||||||||||||||||| |||||||
Sbjct: 72 agaagttcaagaaagccgtggaatagcatga 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 14 catgttattccacagctttcttgaacttct 43
|||| |||||||| ||||||||||||||||
Sbjct: 101 catgctattccacggctttcttgaacttct 72
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 103 gaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||| |||||||| ||||
Sbjct: 32 gaagttcaagaaagctgtggaaaaacatg 4
>48579_gma-miR396b:pmrd
Length = 126
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||||| |||||||||||||||
Sbjct: 43 agaagttcaagaaagctgtggaaaagcatgac 12
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
>54584_smo-miR396:pmrd
Length = 168
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 106 gttcaagaaagccgtggaaaagcatga 132
|||||||||||||||||||||||||||
Sbjct: 29 gttcaagaaagccgtggaaaagcatga 3
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 23 ccacagctttcttgaacttc 42
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>51737_ptc-miR396d:pmrd
Length = 154
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 103 gaagttcaagaaagccgtggaaaagcatgac 133
||||||||||||||| |||||||||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttc 42
||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttc 32
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 102 agaagttcaagaaagccgtggaaaagcatg 131
|||||||||||||||| |||||||||||||
Sbjct: 112 agaagttcaagaaagctgtggaaaagcatg 141
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaacttct 112
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 102 agaagttcaagaaagccgtggaaaagcatg 131
|||||||||||||||| |||||||||||||
Sbjct: 112 agaagttcaagaaagctgtggaaaagcatg 141
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaacttct 112
>48947_osa-miR396c:pmrd
Length = 141
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 99 aagagaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||||| ||||||| |||||
Sbjct: 36 aagagaagttcaagaaagctgtggaaaggcatg 4
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 103 gaagttcaagaaagccgtggaaaagcat 130
||||||||||||||| ||||||||||||
Sbjct: 121 gaagttcaagaaagctgtggaaaagcat 148
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaacttc 42
||||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaacttc 121
>48748_mtr-miR396a:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaaagca 129
|||||||||||||||| |||||||||||
Sbjct: 28 agaagttcaagaaagctgtggaaaagca 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaacttct 28
>55078_zma-miR396g:pmrd
Length = 117
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaacttct 25
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaa 125
|||||||||||||||| |||||||
Sbjct: 25 agaagttcaagaaagctgtggaaa 2
>55077_zma-miR396f:pmrd
Length = 166
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaacttct 25
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 102 agaagttcaagaaagccgtggaaa 125
|||||||||||||||| |||||||
Sbjct: 25 agaagttcaagaaagctgtggaaa 2
>54487_sbi-miR396c:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 101 gagaagttcaagaaagccgtggaaaagcatg 131
||||||||||||||||| ||||||| |||||
Sbjct: 44 gagaagttcaagaaagctgtggaaaggcatg 14
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaacttct 43
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
>51564_pta-miR396:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatgaca 134
|||||||||||||| ||||||||| ||||||
Sbjct: 37 aagttcaagaaagctgtggaaaagtatgaca 7
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactt 41
|||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaactt 37
>52919_ptc-miRf11097-akr:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 agttcaagaaagccgtggaaaa 126
||||||||||||||||||||||
Sbjct: 93 agttcaagaaagccgtggaaaa 114
>51739_ptc-miR396f:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 105 agttcaagaaagccgtggaaaa 126
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>47009_ath-miR396b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 104 aagttcaagaaagccgtggaaaagcatgac 133
|||||||||||||| ||||||||| |||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactt 41
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactt 41
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaactt 41
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ttccacagctttcttgaact 40
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
