miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54881_vvi-miR399e:pmrd
Length = 112
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 75 cattcatgtggtgtgccctctgccaaaggagatttgcccggcaattctt 123
||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cattcttgtagtgtgccctctgccaaaggagatttgcccggcaattctt 110
>51756_ptc-miR399j:pmrd
Length = 112
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 tgcattacagggcaagacctccattggcaggcagccact 39
Score = 61.9 bits (31), Expect = 1e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 85 gtgtgccctctgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||| ||||||| ||||
Sbjct: 72 gtgtgccctctgccaaaggagatttgtccggcaaatctt 110
>47020_ath-miR399f:pmrd
Length = 118
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 81 tgtggtgtgccctctgccaaaggagatttgcccggcaattct 122
||||||| || |||||||||||||||||||||||| ||||||
Sbjct: 74 tgtggtgagctctctgccaaaggagatttgcccggtaattct 115
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcag 43
|||||||||||||||||| ||||||||||
Sbjct: 4 tgcattacagggcaagatcaccattggcag 33
>51749_ptc-miR399c:pmrd
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattctt 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
|||||||||||||||| || ||||||||| |||||||||
Sbjct: 9 tgcattacagggcaagctt-ccattggcatgcagccact 46
>51748_ptc-miR399b:pmrd
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 95 tgccaaaggagatttgcccggcaattctt 123
|||||||||||||||||||||||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattctt 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 14 tgcattacagggcaagatttccattggcaggcagccact 52
|||||||||||||||| || ||||||||| |||||||||
Sbjct: 9 tgcattacagggcaagctt-ccattggcatgcagccact 46
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||||| |||||||
Sbjct: 63 ctctgccaaaggagatttgccccgcaattc 92
>47018_ath-miR399d:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||||| |||||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaattc 96
>52630_ptc-miRf10808-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 95 tgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 17 attacagggcaagatttccattggcaggcagccact 52
||||||||||||| || ||||||||| |||||||||
Sbjct: 110 attacagggcaagctt-ccattggcatgcagccact 76
>51890_ptc-miRf10068-akr:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 95 tgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||||||
Sbjct: 25 tgccaaaggagatttgcccggcaat 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 33/36 (91%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 17 attacagggcaagatttccattggcaggcagccact 52
||||||||||||| || ||||||||| |||||||||
Sbjct: 110 attacagggcaagctt-ccattggcatgcagccact 76
>54494_sbi-miR399f:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 78 ctctgccaaaggagatttgcccagcaat 105
>51747_ptc-miR399a:pmrd
Length = 120
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaattc 121
|||||||||||||||||||| |||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattc 117
>48969_osa-miR399f:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||||| |||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaat 111
>48377_bna-miR399:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 ctctgccaaaggagatttgcccgg 115
||||||||||||||||||||||||
Sbjct: 78 ctctgccaaaggagatttgcccgg 101
>47015_ath-miR399a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattctt 123
||||||||||||||||||||| | |||||||
Sbjct: 91 tctgccaaaggagatttgccctgtaattctt 121
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 tgccctctgccaaaggagatttgccc 113
||||||||||||||||||| ||||||
Sbjct: 75 tgccctctgccaaaggagagttgccc 100
>54493_sbi-miR399e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 86 ctgccaaaggagatttgcccagcaat 111
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 84 ctgccaaaggagatttgcccagcaat 109
>48968_osa-miR399e:pmrd
Length = 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgcccggcaat 119
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>48754_mtr-miR399e:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattct 122
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>48750_mtr-miR399a:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgcccggcaattct 122
||||||||||||||||||||| || |||||
Sbjct: 93 tctgccaaaggagatttgcccagcgattct 122
>47019_ath-miR399e:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 cctctgccaaaggagatttgcc 112
||||||||||||||||||||||
Sbjct: 75 cctctgccaaaggagatttgcc 96
>48973_osa-miR399j:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 89 gccctctgccaaaggagatttgccc 113
|||||||||||||||||| ||||||
Sbjct: 70 gccctctgccaaaggagagttgccc 94
>48970_osa-miR399g:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tctgccaaaggagatttgccc 113
|||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgccc 107
>55098_zma-miR399h:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 90 ccctctgccaaaggagatttgccc 113
||||||||||||||||| ||||||
Sbjct: 60 ccctctgccaaaggagagttgccc 83
>55095_zma-miR399e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 90 ccctctgccaaaggagatttgccc 113
||||||||||||||||| ||||||
Sbjct: 80 ccctctgccaaaggagagttgccc 103
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 ctgccaaaggagatttgccc 113
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
