miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51753_ptc-miR399g:pmrd
Length = 94
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattcaac 106
|||||||||||||||||||||||||||||
Sbjct: 66 gccaaaggagaattgccctgccattcaac 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 13 gaataacagcgcaattctcctttggcaga 41
||||||| | |||||||||||||||||||
Sbjct: 5 gaataactgtgcaattctcctttggcaga 33
>55091_zma-miR399a:pmrd
Length = 123
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
|||||||||||||||||||||||||||
Sbjct: 85 gccaaaggagaattgccctgccattca 111
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 78 gccaaaggagaattgccctgccattca 104
|||||||||||||||||||||||||||
Sbjct: 27 gccaaaggagaattgccctgccattca 1
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 13 gaataacagcgcaattctcctttggcaga 41
||||||| | |||||||||||||||||||
Sbjct: 88 gaataactgtgcaattctcctttggcaga 60
>48965_osa-miR399b:pmrd
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
|||||||||||||||||||||||||||
Sbjct: 68 gccaaaggagaattgccctgccattca 94
>54884_vvi-miR399h:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 61 gccaaaggagaattgccctgccattc 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 13 gaataacagcgcaattctcctttggcagaaa 43
||||||||| ||||| |||||||||||||||
Sbjct: 3 gaataacagtgcaatcctcctttggcagaaa 33
>54496_sbi-miR399h:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 94 gccaaaggagaattgccctgccattc 119
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 26 gccaaaggagaattgccctgccattc 1
>51752_ptc-miR399f:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 73 gccaaaggagaattgccctgccattc 98
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||||||||
Sbjct: 80 gccaaaggagaattgccctgccattc 105
>54877_vvi-miR399a:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 gaataacagcgcaattctcctttggcaga 41
||||||||| |||||||||||||||||||
Sbjct: 93 gaataacagggcaattctcctttggcaga 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctg 97
||||||||||||||||||||
Sbjct: 68 gccaaaggagaattgccctg 87
>48966_osa-miR399c:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattca 104
||||||||||||||||||||| |||||
Sbjct: 81 gccaaaggagaattgccctgcgattca 107
>55093_zma-miR399c:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||| ||||
Sbjct: 169 gccaaaggagaattgccctgcgattc 194
>54498_sbi-miR399j:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgcc 99
||||||||||||||||||||||
Sbjct: 72 gccaaaggagaattgccctgcc 93
>54491_sbi-miR399c:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||| ||||
Sbjct: 92 gccaaaggagaattgccctgcgattc 117
>54489_sbi-miR399a:pmrd
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccattc 103
||||||||||||||||||||| ||||
Sbjct: 99 gccaaaggagaattgccctgcgattc 124
>48964_osa-miR399a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgc 98
|||||||||||||||||||||
Sbjct: 120 gccaaaggagaattgccctgc 140
>48752_mtr-miR399c:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctgccatt 102
||||||||||| |||||||||||||
Sbjct: 81 gccaaaggagatttgccctgccatt 105
>47015_ath-miR399a:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 9 agaagaataacagcgcaattctcctttggcaga 41
|||||||| |||| |||| ||||||||||||||
Sbjct: 123 agaagaattacagggcaaatctcctttggcaga 91
>55102_zma-miR399l:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctg 97
||||||||||||||||||||
Sbjct: 66 gccaaaggagaattgccctg 85
>55101_zma-miR399k:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 gccaaaggagaattgccctg 97
||||||||||||||||||||
Sbjct: 149 gccaaaggagaattgccctg 168
