miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54884_vvi-miR399h:pmrd
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 62 acttctgttttgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||||||||||||||||||
Sbjct: 50 acttctgttttgccaaaggagaattgccctgccattc 86
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 64 ttctgttttgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ttctgttttgccaaaggagaattgccctgccattc 1
>51752_ptc-miR399f:pmrd
Length = 101
Score = 69.9 bits (35), Expect = 4e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 64 ttctgttttgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||||||||||||||||
Sbjct: 64 ttctgttttgccaaaggagaattgccctgccattc 98
>55091_zma-miR399a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 71 ttgccaaaggagaattgccctgccattca 99
|||||||||||||||||||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccattca 111
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 72 tgccaaaggagaattgccctgccattca 99
||||||||||||||||||||||||||||
Sbjct: 28 tgccaaaggagaattgccctgccattca 1
>51753_ptc-miR399g:pmrd
Length = 94
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattca 99
||||||||||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>48965_osa-miR399b:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattca 99
||||||||||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>54496_sbi-miR399h:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccattc 119
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||||||||
Sbjct: 79 tgccaaaggagaattgccctgccattc 105
>48752_mtr-miR399c:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 9e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 64 ttctgttttgccaaaggagaattgccctgccatt 97
||||| |||||||||||||| |||||||||||||
Sbjct: 72 ttctggtttgccaaaggagatttgccctgccatt 105
>54498_sbi-miR399j:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 ttgccaaaggagaattgccctgcc 94
||||||||||||||||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>48966_osa-miR399c:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattca 99
|||||||||||||||||||||| |||||
Sbjct: 80 tgccaaaggagaattgccctgcgattca 107
>55093_zma-miR399c:pmrd
Length = 207
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194
>54491_sbi-miR399c:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||| ||||
Sbjct: 91 tgccaaaggagaattgccctgcgattc 117
>54489_sbi-miR399a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattc 98
|||||||||||||||||||||| ||||
Sbjct: 98 tgccaaaggagaattgccctgcgattc 124
>55102_zma-miR399l:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ttgccaaaggagaattgccctg 92
||||||||||||||||||||||
Sbjct: 64 ttgccaaaggagaattgccctg 85
>54490_sbi-miR399b:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattcatt 101
|||||||||||| ||||||||||||||||
Sbjct: 84 tgccaaaggagagctgccctgccattcatt 113
>48964_osa-miR399a:pmrd
Length = 149
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgc 93
||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140
>55101_zma-miR399k:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctg 92
|||||||||||||||||||||
Sbjct: 148 tgccaaaggagaattgccctg 168
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctg 92
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>48972_osa-miR399i:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgccattca 99
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattca 113
>48513_ghr-miR399b:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 69 ttttgccaaaggagaattgccctg 92
||||||||||||||| ||||||||
Sbjct: 54 ttttgccaaaggagatttgccctg 77
>48316_bdi-miR399:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 tgccaaaggagaattgccctgcca 95
||||||||||||||| ||||||||
Sbjct: 73 tgccaaaggagaattaccctgcca 96
