miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52848_ptc-miRf11026-akr:pmrd
          Length = 124

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tttatctgcatttgcacctgcacct 39
          |||||||||||||||||||||||||
Sbjct: 4  tttatctgcatttgcacctgcacct 28

>52847_ptc-miRf11025-akr:pmrd
          Length = 138

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tttatctgcatttgcacctgcacct 39
          |||||||||||||||||||||||||
Sbjct: 12 tttatctgcatttgcacctgcacct 36

>51904_ptc-miRf10082-akr:pmrd
          Length = 118

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tttatctgcatttgcacctgcacct 39
          |||||||||||||||||||||||||
Sbjct: 1  tttatctgcatttgcacctgcacct 25

>51806_ptc-miR530a:pmrd
          Length = 144

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 tttatctgcatttgcacctgcacct 39
          |||||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcacct 39

>53341_ptc-miRf11519-akr:pmrd
          Length = 152

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tttatctgcatttgcacctgca 36
          ||||||||||||||||||||||
Sbjct: 4  tttatctgcatttgcacctgca 25

>51807_ptc-miR530b:pmrd
          Length = 172

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tttatctgcatttgcacctgca 36
          ||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgca 36

>49892_osa-miRf10677-akr:pmrd
          Length = 153

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 20 ctgcatttgcacctgcacct 39
          ||||||||||||||||||||
Sbjct: 8  ctgcatttgcacctgcacct 27