miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>52847_ptc-miRf11025-akr:pmrd
Length = 138
Score = 60.0 bits (30), Expect = 6e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 atgtagcctttatctgcatttgcacctgcacctt 40
|||| |||||||||||||||||||||||||||||
Sbjct: 4 atgttgcctttatctgcatttgcacctgcacctt 37
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 137 gaggtgcaggggcagctgcaggtgaatgccat 168
|||||||||| |||| ||||||||||||||||
Sbjct: 104 gaggtgcaggtgcaggtgcaggtgaatgccat 135
>51806_ptc-miR530a:pmrd
Length = 144
Score = 60.0 bits (30), Expect = 6e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 atgtagcctttatctgcatttgcacctgcacctt 40
|||| |||||||||||||||||||||||||||||
Sbjct: 7 atgttgcctttatctgcatttgcacctgcacctt 40
Score = 50.1 bits (25), Expect = 6e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173
|||||||||| |||| |||||||||||||||| ||||
Sbjct: 107 gaggtgcaggtgcaggtgcaggtgaatgccatgttgg 143
>52848_ptc-miRf11026-akr:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 gcctttatctgcatttgcacctgcacctt 40
|||||||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgcacctt 29
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 137 gaggtgcaggggcagctgcaggtgaatgc 165
|||||||||| |||| |||||||||||||
Sbjct: 96 gaggtgcaggtgcaggtgcaggtgaatgc 124
>51904_ptc-miRf10082-akr:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tttatctgcatttgcacctgcacctt 40
||||||||||||||||||||||||||
Sbjct: 1 tttatctgcatttgcacctgcacctt 26
>51807_ptc-miR530b:pmrd
Length = 172
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 7 atgtagcctttatctgcatttgcacctgca 36
|||| |||||||||||||||||||||||||
Sbjct: 7 atgttgcctttatctgcatttgcacctgca 36
Score = 50.1 bits (25), Expect = 6e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 137 gaggtgcaggggcagctgcaggtgaatgccattttgg 173
|||||||||| ||| |||||||||||||||||||||
Sbjct: 135 gaggtgcaggtgcaagtgcaggtgaatgccattttgg 171
>53341_ptc-miRf11519-akr:pmrd
Length = 152
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gcctttatctgcatttgcacctgca 36
|||||||||||||||||||||||||
Sbjct: 1 gcctttatctgcatttgcacctgca 25
>49892_osa-miRf10677-akr:pmrd
Length = 153
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ctgcatttgcacctgcacct 39
||||||||||||||||||||
Sbjct: 8 ctgcatttgcacctgcacct 27
