miRNEST 2.0, an integrative microRNA resource :: BLAST
>51734_ptc-miR396a:pmrd
Length = 123
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 78 tttgttgcggttcaataaagctgtgggaagatacaa 113
||||||||||||||||||||||||||||||||||||
Sbjct: 88 tttgttgcggttcaataaagctgtgggaagatacaa 123
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 gtatttttccacagctttcttgaactgca 42
||||| |||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>48680_lja-miR396:pmrd
Length = 108
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 6 tcctctttgtatttttccacagctttcttgaactgcat 43
||||||||||||| ||||||||||||||||||||||||
Sbjct: 2 tcctctttgtattcttccacagctttcttgaactgcat 39
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagata 110
|||||||||||||||||||||||||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagata 99
>54871_vvi-miR396d:pmrd
Length = 120
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 81 gttgcggttcaataaagctgtgggaagatacaaacag 117
||||||||||||||||||||||||||||||| |||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagataccaacag 120
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgcat 43
||||||||| ||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>48578_gma-miR396a:pmrd
Length = 140
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 8 ctctttgtatttttccacagctttcttgaactgcatc 44
||||||||||| |||||||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcatc 45
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagataca 112
|||||||||||||||||||||||||||||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagataca 128
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 78 tttgttgcggttcaataaagctgtgggaagatacaa 113
|||| |||||||||||||||||||||||||||||||
Sbjct: 95 tttgctgcggttcaataaagctgtgggaagatacaa 130
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 ttgtatttttccacagctttcttgaactgca 42
||||||| |||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
>51735_ptc-miR396b:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 78 tttgttgcggttcaataaagctgtgggaagatacaa 113
|||| |||||||||||||||||||||||||||||||
Sbjct: 97 tttgctgcggttcaataaagctgtgggaagatacaa 132
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 ctttgtatttttccacagctttcttgaactgca 42
||||||||| |||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagatacaaacag 117
||||||||||||||||||||||||||||||| ||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatacagacag 160
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 7 cctctttgtatttttccacagctttcttgaactgca 42
||||| |||||| |||||||||||||||||||||||
Sbjct: 5 cctctctgtattcttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaagataca 112
|||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 tgtatttttccacagctttcttgaactgca 42
|||||| |||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatcat 46
|||||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcatcat 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>48508_ghr-miR396c:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 ttgttgcggttcaataaagctgtggga 105
|||||||||||||||||||||||||||
Sbjct: 89 ttgttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgca 42
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>48507_ghr-miR396b:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 ttgttgcggttcaataaagctgtggga 105
|||||||||||||||||||||||||||
Sbjct: 89 ttgttgcggttcaataaagctgtggga 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgca 42
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
>55083_zma-miR396l:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>55073_zma-miR396b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcatc 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>48946_osa-miR396b:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgcatc 35
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48485_gcl-miR396a:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 20 ttccacagctttcttgaactgcatc 44
|||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 82 ttgcggttcaataaagctgtggga 105
||||||||||||||||||||||||
Sbjct: 24 ttgcggttcaataaagctgtggga 1
>46887_aqc-miR396a:pmrd
Length = 122
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtgggaa 106
|||||||||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55074_zma-miR396c:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcat 43
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48486_gcl-miR396b:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 82 ttgcggttcaataaagctgtggga 105
||||||||||||||||||||||||
Sbjct: 78 ttgcggttcaataaagctgtggga 101
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgcatc 44
||||| |||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatc 25
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 17 tttttccacagctttcttgaact 39
|||||||||||||||||||||||
Sbjct: 96 tttttccacagctttcttgaact 74
>51736_ptc-miR396c:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tttttccacagctttcttgaact 39
|||||||||||||||||||||||
Sbjct: 8 tttttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgca 42
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87 gttcaataaagctgtgggaa 106
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactgc 41
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 12 ttttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 12 ttttccacagctttcttgaact 33
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 136 ttttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 144 ttttccacagctttcttgaact 123
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 136 ttttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 15 ttttccacagctttcttgaact 36
>48748_mtr-miR396a:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 4 ttttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 19 ttttccacagctttcttgaact 40
>47009_ath-miR396b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 ttttccacagctttcttgaact 39
||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaact 30
>55078_zma-miR396g:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tttccacagctttcttgaact 39
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tttccacagctttcttgaact 39
|||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaact 22
>54870_vvi-miR396c:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaactg 40
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactg 31
>54487_sbi-miR396c:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tttccacagctttcttgaact 39
|||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaact 40
>48947_osa-miR396c:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tttccacagctttcttgaact 39
|||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaact 30
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaact 39
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 ttccacagctttcttgaact 39
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
