miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48428_cpt-miR408:pmrd
Length = 100
Score = 198 bits (100), Expect = 9e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 51 agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60
Query: 111 gctcctcccatgcactgcctcttccctggctctctgcctt 150
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcctcccatgcactgcctcttccctggctctctgcctt 100
>51762_ptc-miR408:pmrd
Length = 105
Score = 87.7 bits (44), Expect = 2e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 57 aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 114
|||||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70
Query: 115 ctcccatgcactgcctcttccctggct 141
|||||||||||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggct 97
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 73.8 bits (37), Expect = 3e-14
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 61 cggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctcctcc 118
|||||||||||||||||||||||||| | | |||||| || || ||||||||||| ||
Sbjct: 1 cggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctacc 59
Query: 119 catgcactgcctcttccctg 138
||||||||||||||||||||
Sbjct: 60 catgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 101 ctctgttttggctcctcccatgcactgcctcttccctggctc 142
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 45 ctctgttttgtctctacccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 101 ctctgttttggctcctcccatgcactgcctcttccctggctc 142
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142
>54892_vvi-miR408:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 103 ctgttttggctcctcccatgcactgcctcttccctggctct 143
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
>54389_rco-miR408:pmrd
Length = 129
Score = 56.0 bits (28), Expect = 8e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 102 tctgttttggctcctcccatgcactgcctcttccctggct 141
||||||||||||| ||| |||||||||||||||||||||
Sbjct: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
>54648_sof-miR408c:pmrd
Length = 286
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 113 tcctcccatgcactgcctcttccctggctc 142
||||||| ||||||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 113 tcctcccatgcactgcctcttccctggctc 142
||||||| ||||||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 113 tcctcccatgcactgcctcttccctggctc 142
||||||| ||||||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266
>55104_zma-miR408:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 114 cctcccatgcactgcctcttccctggctc 142
|||||| ||||||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174
>54499_sbi-miR408:pmrd
Length = 205
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 113 tcctcccatgcactgcctcttccctggct 141
||||||| |||||||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 114 cctcccatgcactgcctcttccctggctc 142
|||||| ||||||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 118 ccatgcactgcctcttccctggct 141
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggctc 142
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggct 141
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 119 catgcactgcctcttccctggct 141
|||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggct 96
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 57 aagacggggaacaggcagagcatggatgga 86
||||| ||||||||| ||||||||||||||
Sbjct: 7 aagacagggaacaggtagagcatggatgga 36
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctc 142
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 121 tgcactgcctcttccctggctc 142
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 120 atgcactgcctcttccctggct 141
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 118 ccatgcactgcctcttccctgg 139
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
