miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51596_ptc-miR156f:pmrd
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 agagaaagactgacagaagagagtgagcacacacgaaagctaattgtatgaaagcatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagaaagactgacagaagagagtgagcacacacgaaagctaattgtatgaaagcatacc 60
Query: 61 attgcagggtgtgtgctcacttctcttctgtcagcttacat 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attgcagggtgtgtgctcacttctcttctgtcagcttacat 101
>51591_ptc-miR156a:pmrd
Length = 101
Score = 133 bits (67), Expect = 3e-32
Identities = 88/95 (92%)
Strand = Plus / Plus
Query: 3 agaaagactgacagaagagagtgagcacacacgaaagctaattgtatgaaagcataccat 62
||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||
Sbjct: 3 agaaagactgacagaagagagtgagcacacacgaaagtatatggtatgaaggcattccat 62
Query: 63 tgcagggtgtgtgctcacttctcttctgtcagctt 97
|||||||||||||||||| ||||||||||||||||
Sbjct: 63 tgcagggtgtgtgctcacatctcttctgtcagctt 97
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 4 gaaagactgacagaagagagtgagcacacacgaaagctaattgtatgaaagcataccatt 63
|||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||
Sbjct: 1 gaaagactgacagaagagagtgagcacacacgaaagtatatggtatgaaggcattccatt 60
Query: 64 gcagggtgtgtgctcacttctcttctgtcagctt 97
||||||||||||||||| ||||||||||||||||
Sbjct: 61 gcagggtgtgtgctcacatctcttctgtcagctt 94
>48491_ghr-miR156d:pmrd
Length = 96
Score = 63.9 bits (32), Expect = 2e-11
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacacgaaagctaattgtatgaaag--cataccattgcagg 68
|||||||||||||||||||||| | | || |||||||||||| |||||| |||| |
Sbjct: 9 tgacagaagagagtgagcacacgc--aggcagattgtatgaaaggccatacctttgcccg 66
Query: 69 gtgtgtgctcacttctcttctgtcagctta 98
||||||||||||||||||||||||||||
Sbjct: 67 ccgtgtgctcacttctcttctgtcagctta 96
>48528_gma-miR156a:pmrd
Length = 122
Score = 58.0 bits (29), Expect = 1e-09
Identities = 76/89 (85%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacacacgaaagctaattgtatgaaagcataccattgcaggg 69
|||||||||||||||||||||| | | | || |||||||| |||||| ||||| |||
Sbjct: 20 ctgacagaagagagtgagcacatgctagtggtatttgtatgagggcatacaattgc-ggg 78
Query: 70 tgtgtgctcacttctct-tctgtcagctt 97
|| |||||||||||||| |||||||||||
Sbjct: 79 tgcgtgctcacttctctatctgtcagctt 107
>54769_vvi-miR156d:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agagaaagactgacagaagagagtgagcaca 31
||||| |||||||||||||||||||||||||
Sbjct: 1 agagagagactgacagaagagagtgagcaca 31
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 10 ctgacagaagagagtgagcacacacg 35
||||||||||||||||||||||||||
Sbjct: 90 ctgacagaagagagtgagcacacacg 65
>48802_osa-miR156b:pmrd
Length = 176
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacacacg 35
||||||||||||||||||||||||||
Sbjct: 42 ctgacagaagagagtgagcacacacg 67
>54922_zma-miR156m:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacacg 35
|||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacacg 25
>54912_zma-miR156b:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacacg 35
|||||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacacacg 45
>54911_zma-miR156a:pmrd
Length = 152
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 16 actgacagaagagagtgagcacaca 40
>54767_vvi-miR156b:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 9 actgacagaagagagtgagcacaca 33
>54401_sbi-miR156i:pmrd
Length = 121
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 1 actgacagaagagagtgagcacaca 25
>54394_sbi-miR156b:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacacacg 35
|||||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacacg 25
>51593_ptc-miR156c:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 9 actgacagaagagagtgagcacaca 33
>46912_ath-miR156c:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 10 actgacagaagagagtgagcacaca 34
>46910_ath-miR156a:pmrd
Length = 123
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacaca 33
|||||||||||||||||||||||||
Sbjct: 19 actgacagaagagagtgagcacaca 43
>54913_zma-miR156c:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 20 ctgacagaagagagtgagcacaca 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 70 tgtgtgctcacttctcttctgtcagctt 97
|||||||||||| |||||||||||||||
Sbjct: 43 tgtgtgctcact-ctcttctgtcagctt 17
>51354_ppr-miR156:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>48807_osa-miR156g:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 3 ctgacagaagagagtgagcacaca 26
>48803_osa-miR156c:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 28 ctgacagaagagagtgagcacaca 51
>48795_oru-miR156:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgacagaagagagtgagcacaca 33
||||||||||||||||||||||||
Sbjct: 1 ctgacagaagagagtgagcacaca 24
>48425_cpt-miR156a:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcacac 32
||||||||||||||||||||||||
Sbjct: 9 actgacagaagagagtgagcacac 32
>54924_zma-miR156o:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>54768_vvi-miR156c:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>54395_sbi-miR156c:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 93 tgacagaagagagtgagcacaca 71
>51595_ptc-miR156e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51594_ptc-miR156d:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>51592_ptc-miR156b:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 11 tgacagaagagagtgagcacaca 33
>48806_osa-miR156f:pmrd
Length = 186
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 4 tgacagaagagagtgagcacaca 26
>48652_hvv-miR156a:pmrd
Length = 394
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>48489_ghr-miR156b:pmrd
Length = 113
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>48488_ghr-miR156a:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacaca 31
>48336_bna-miR156a:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacaca 23
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 96 tgacagaagagagtgagcacaca 74
>48243_ath-miRf11143-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 actgacagaagagagtgagcaca 31
|||||||||||||||||||||||
Sbjct: 92 actgacagaagagagtgagcaca 70
>47667_ath-miRf10567-akr:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 6 tgacagaagagagtgagcacaca 28
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacaca 25
>46915_ath-miR156f:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 21 tgacagaagagagtgagcacaca 43
>46914_ath-miR156e:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacaca 29
>46913_ath-miR156d:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacaca 33
|||||||||||||||||||||||
Sbjct: 18 tgacagaagagagtgagcacaca 40
>46911_ath-miR156b:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 actgacagaagagagtgagcaca 31
|||||||||||||||||||||||
Sbjct: 45 actgacagaagagagtgagcaca 67
>54923_zma-miR156n:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54919_zma-miR156i:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 13 tgacagaagagagtgagcacac 34
>54918_zma-miR156h:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54915_zma-miR156e:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>54914_zma-miR156d:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 16 tgacagaagagagtgagcacac 37
>54656_stu-miR156a:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>54402_sbi-miR157:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54400_sbi-miR156h:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54399_sbi-miR156g:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacac 23
>54393_sbi-miR156a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>48813_osa-miR156m:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 1 tgacagaagagagtgagcacac 22
>48810_osa-miR156j:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 42 tgacagaagagagtgagcacac 63
>48809_osa-miR156i:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 3 tgacagaagagagtgagcacac 24
>48808_osa-miR156h:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 9 tgacagaagagagtgagcacac 30
>48805_osa-miR156e:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 10 tgacagaagagagtgagcacac 31
>48804_osa-miR156d:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 20 tgacagaagagagtgagcacac 41
>48801_osa-miR156a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgacagaagagagtgagcacac 32
||||||||||||||||||||||
Sbjct: 7 tgacagaagagagtgagcacac 28
>46916_ath-miR156g:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gacagaagagagtgagcacaca 33
||||||||||||||||||||||
Sbjct: 12 gacagaagagagtgagcacaca 33
