miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51599_ptc-miR156i:pmrd
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 tgtgatgttgttgacagaagatagagagcacagatgatgttttgcagtagactctggatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgatgttgttgacagaagatagagagcacagatgatgttttgcagtagactctggatc 60
Query: 61 tcactcctttgtgctctctatgcttctgccatcaccttc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcactcctttgtgctctctatgcttctgccatcaccttc 99
>51600_ptc-miR156j:pmrd
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcacagatgatgttttgcagtagactctggatct 61
|||||||||||||||||||||||||||||||||||||| | |||| | ||||||| |||
Sbjct: 2 gtgatgttgttgacagaagatagagagcacagatgatgatatgcaatggactctgcatcc 61
Query: 62 cactcctttgtgctctctatgcttctgccatcac 95
||||||||||||||||||||||||||| ||||||
Sbjct: 62 cactcctttgtgctctctatgcttctgtcatcac 95
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 115 bits (58), Expect = 6e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcacagatgatgttttgcagtagactctggatctcactcct 68
||||||||||||||||||||||||||||||| | |||| | ||||||| ||| |||||||
Sbjct: 1 tgttgacagaagatagagagcacagatgatgatatgcaatggactctgcatcccactcct 60
Query: 69 ttgtgctctctatgcttctgccatca 94
|||||||||||||||||||| |||||
Sbjct: 61 ttgtgctctctatgcttctgtcatca 86
>54772_vvi-miR156g:pmrd
Length = 103
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcacagatgatgttttgcagtagactctggatct 61
|||||||||||||||||||||||||||||||||||||| | |||| | || | || ||||
Sbjct: 2 gtgatgttgttgacagaagatagagagcacagatgatgatgtgca-tggagtttgcatct 60
Query: 62 cactcctttgtgctctctatgcttctgccatcacct 97
||||||||||||||||||| |||||| ||||||||
Sbjct: 61 cactcctttgtgctctctagacttctgtcatcacct 96
>46862_aqc-miR156b:pmrd
Length = 83
Score = 101 bits (51), Expect = 9e-23
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcacagatgatgttttgca-gtagactctggatctcactccttt 70
|||||||||||||||||||||||||||| | |||| | ||| |||| |||||||||||||
Sbjct: 1 tgacagaagatagagagcacagatgatgatatgcatggagagtctgcatctcactccttt 60
Query: 71 gtgctctctatgcttctgccatc 93
|||||||||||||||||| ||||
Sbjct: 61 gtgctctctatgcttctgtcatc 83
>54774_vvi-miR156i:pmrd
Length = 103
Score = 81.8 bits (41), Expect = 9e-17
Identities = 84/97 (86%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcacagatgatgttttgcagtagactctggatct 61
|||| ||||||||||||||||||||||||||||||||| |||| || | | ||||
Sbjct: 2 gtgacgttgttgacagaagatagagagcacagatgatgaaatgca-aggagccagcatct 60
Query: 62 cactcctttgtgctctctatgcttctgccatcacctt 98
|||||||||||||||||||| |||||| |||||||||
Sbjct: 61 cactcctttgtgctctctattcttctgtcatcacctt 97
>51597_ptc-miR156g:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcacagatgatg 39
||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgatgttgttgacagaagatagagagcacagatgatg 39
>48695_mtr-miR156e:pmrd
Length = 172
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||||
Sbjct: 2 gttgttgacagaagatagagagcacagatgatg 34
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 61 tcactcctttgtgctctctatgcttctgccatcacc 96
|||||||||||||||||||||||||||| |||||||
Sbjct: 137 tcactcctttgtgctctctatgcttctgtcatcacc 172
>48631_gra-miR157b:pmrd
Length = 91
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcacagatgatg 33
>48630_gra-miR157a:pmrd
Length = 101
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||||
Sbjct: 1 gttgttgacagaagatagagagcacagatgatg 33
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 62 cactcctttgtgctctctatgcttctgccatcacc 96
|||||||||||||||| |||||||||| |||||||
Sbjct: 67 cactcctttgtgctctttatgcttctgtcatcacc 101
>48531_gma-miR156d:pmrd
Length = 151
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||||
Sbjct: 17 gttgttgacagaagatagagagcacagatgatg 49
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatcaccttc 99
|||| ||||||||||||||||||| |||||| ||||||||||
Sbjct: 98 atcttactcctttgtgctctctatacttctgtcatcaccttc 139
>48697_mtr-miR156h:pmrd
Length = 94
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||
Sbjct: 4 tgttgacagaagatagagagcacagatgatg 34
>46924_ath-miR157a:pmrd
Length = 98
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||||
Sbjct: 2 tgttgacagaagatagagagcacagatgatg 32
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatcacc 96
|||| |||||||||||||||||| |||||| |||||||
Sbjct: 60 atcttactcctttgtgctctctagccttctgtcatcacc 98
>51598_ptc-miR156h:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatcaccttc 99
||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 61 atctcactcctttgtgctctctagtcttctgtcatcaccttc 102
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcac 31
|||||| |||||||||||||||||||||||
Sbjct: 2 gtgatgctgttgacagaagatagagagcac 31
>48532_gma-miR156e:pmrd
Length = 124
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 2 gtgatgttgttgacagaagatagagagcacagatgatg 39
|||||| ||||||||||||||||||||||| |||||||
Sbjct: 12 gtgatgctgttgacagaagatagagagcactgatgatg 49
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatca 94
||||||||||||||||||||||| |||||| |||||
Sbjct: 71 atctcactcctttgtgctctctagtcttctgtcatca 107
>46925_ath-miR157b:pmrd
Length = 132
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcacagatgat 38
||||||||||||||||||||||||||||||
Sbjct: 17 tgttgacagaagatagagagcacagatgat 46
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatcacc 96
|||| |||||||||||||||||| |||||| |||||||
Sbjct: 75 atcttactcctttgtgctctctagccttctgtcatcacc 113
>48790_nta-miR157:pmrd
Length = 131
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcacagatgatg 39
|||||||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacagatgatg 29
>46861_aqc-miR156a:pmrd
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcacagatgatgttttgcagtagactctggatctcactcctttg 71
|||||||||||||||||||||||||| | ||||| | || | || ||||| | |||||
Sbjct: 1 tgacagaagatagagagcacagatgacgaattgca-tggagtttgcatctcgatactttg 59
Query: 72 tgctctctatgcttctg 88
|||||||||||||||||
Sbjct: 60 tgctctctatgcttctg 76
>46927_ath-miR157d:pmrd
Length = 221
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 65 tcctttgtgctctctatgcttctgccatcacctt 98
|||| ||||||||||||||||||| |||||||||
Sbjct: 167 tcctatgtgctctctatgcttctgtcatcacctt 200
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||| ||||||||||||||||||||
Sbjct: 19 gttgctgacagaagatagagagcac 43
>48696_mtr-miR156f:pmrd
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 ttgttgacagaagatagagagcaca 32
|||||||||||||||||||||||||
Sbjct: 3 ttgttgacagaagatagagagcaca 27
>48537_gma-miR157c:pmrd
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 11 ttgacagaagatagagagcacagatgatg 39
||||||||||||||||||||| |||||||
Sbjct: 84 ttgacagaagatagagagcactgatgatg 56
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 atctcactcctttgtgctctcta 80
|||||||||||||||||||||||
Sbjct: 34 atctcactcctttgtgctctcta 12
>48393_bra-miR157a:pmrd
Length = 149
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||||||||||||||||||||||||
Sbjct: 10 gttgttgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||||||||||||||||||||||||
Sbjct: 2 gttgttgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||||||||||||||||||||||||
Sbjct: 14 gttgttgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||||||||||||||||||||||||
Sbjct: 21 gttgttgacagaagatagagagcac 45
>46926_ath-miR157c:pmrd
Length = 217
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 gttgttgacagaagatagagagcac 31
|||||||||||||||||||||||||
Sbjct: 20 gttgttgacagaagatagagagcac 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 63 actcctttgtgctctctatgcttctgccatcacctt 98
|||| |||||||||||||| |||||| || ||||||
Sbjct: 160 actcttttgtgctctctatacttctgtcaccacctt 195
>54771_vvi-miR156f:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
||||||||||||||||||||||||
Sbjct: 9 tgttgacagaagatagagagcaca 32
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 58 atctcactcctttgtgctctctatgcttctgccatc 93
||||||||||||||||||||||| |||||| ||||
Sbjct: 52 atctcactcctttgtgctctctagtcttctgtcatc 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gttgacagaagatagagagcac 31
||||||||||||||||||||||
Sbjct: 1 gttgacagaagatagagagcac 22
>48642_han-miR157a:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcacaga 34
||||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcacaga 24
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 61 tcactcctttgtgctctctatgcttctg 88
||||||||| ||||||||||||||||||
Sbjct: 55 tcactccttcgtgctctctatgcttctg 82
>48530_gma-miR156c:pmrd
Length = 185
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
||||||||||||||||||||||||
Sbjct: 144 tgttgacagaagatagagagcaca 167
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcacaga 34
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>54572_smo-miR156d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 69 ttgtgctctctatgcttctgccatca 94
||||||||||||| ||||||||||||
Sbjct: 67 ttgtgctctctattcttctgccatca 92
>48675_lja-miR157a:pmrd
Length = 58
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcaca 32
||||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcaca 22
>54661_stu-miR157a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 tttgtgctctctatgcttctg 88
|||||||||||||||||||||
Sbjct: 67 tttgtgctctctatgcttctg 87
>54534_sly-miR156c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagcac 31
|||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagcac 21
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 68 tttgtgctctctatgcttctg 88
|||||||||||||||||||||
Sbjct: 76 tttgtgctctctatgcttctg 96
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>54537_sly-miR157c:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 103 ttgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>51323_pco-miR157:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttgacagaagatagagagca 30
||||||||||||||||||||
Sbjct: 1 ttgacagaagatagagagca 20
>48529_gma-miR156b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
||||||||||||| ||||||||||
Sbjct: 18 tgttgacagaagagagagagcaca 41
>48305_bdi-miR156:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 gttgacagaagatagagagcacag 33
|||||||||||| |||||||||||
Sbjct: 99 gttgacagaagagagagagcacag 122
>46917_ath-miR156h:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
||||||||||||| ||||||||||
Sbjct: 9 tgttgacagaagaaagagagcaca 32
>46903_aqc-miR529:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
||||||||||||| ||||||||||
Sbjct: 15 tgttgacagaagagagagagcaca 38
>46857_ahy-miR157k:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgttgacagaagatagagagcaca 32
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Sbjct: 19 tgttgacagaagagagagagcaca 42
