miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51604_ptc-miR159c:pmrd
          Length = 183

 Score =  363 bits (183), Expect = e-101
 Identities = 183/183 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120

                                                                       
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180

              
Query: 181 taa 183
           |||
Sbjct: 181 taa 183




>51602_ptc-miR159a:pmrd
          Length = 183

 Score =  355 bits (179), Expect = 7e-99
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60

                                                                       
Query: 61  taagctatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61  taagctatggatccacagtcctatctatcaactgaaggataggtttgcggcttgcatatc 120

                                                                       
Query: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaaccca 180

              
Query: 181 taa 183
           |||
Sbjct: 181 taa 183




>52093_ptc-miRf10271-akr:pmrd
          Length = 174

 Score =  345 bits (174), Expect = 7e-96
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                       
Query: 6   gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagc 60

                                                                       
Query: 66  tatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcagg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatggatccacagtcctatctatcaaccgaaggataggtttgcggcttgcatatctcagg 120

                                                                 
Query: 126 agctttattgcctaatgttagatccctttttggattgaagggagctctaaaccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctttattgcctaatgttagatccctttttggattgaagggagctctaaaccc 174




>51603_ptc-miR159b:pmrd
          Length = 187

 Score =  133 bits (67), Expect = 5e-32
 Identities = 156/182 (85%), Gaps = 4/182 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattagggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgc 60
           ||||| |||||||||||||||||||||||||||| | || ||||||||||||  ||||||
Sbjct: 1   gattatggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgc 60

                                                                       
Query: 61  taagctatggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgca 116
           | ||||||| |||| |||| ||||||   ||||  |     ||| ||  |||||||||||
Sbjct: 61  tgagctatgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgca 120

                                                                       
Query: 117 tatctcaggagctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
           |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||
Sbjct: 121 tatctcaggagctttattacctaatgttagatctttttttggattgaagggagctctaaa 180

             
Query: 177 cc 178
           ||
Sbjct: 181 cc 182




>54777_vvi-miR159c:pmrd
          Length = 190

 Score = 87.7 bits (44), Expect = 3e-18
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                      
Query: 7  ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
          |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |  |
Sbjct: 5  ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64

                  
Query: 67 atggatcc 74
          ||||||||
Sbjct: 65 atggatcc 72




>54378_pvu-miR159:pmrd
          Length = 174

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
          |||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

               
Query: 70 gatcc 74
          |||||
Sbjct: 61 gatcc 65



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173




>54377_pvu-miR159:pmrd
          Length = 174

 Score = 81.8 bits (41), Expect = 2e-16
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                      
Query: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
          |||||||||||||||||||||| |||| |||| |||||| |||| ||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

               
Query: 70 gatcc 74
          |||||
Sbjct: 61 gatcc 65



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173




>48539_gma-miR159a:pmrd
          Length = 214

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                      
Query: 9  agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
          ||||||||||||||||||||||| |||| |||| ||||||  ||| ||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78

                
Query: 69 ggatcc 74
          ||||||
Sbjct: 79 ggatcc 84



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 154 tttggattgaagggagctctaaaccc 179
           ||||||||||||||||||||| ||||
Sbjct: 175 tttggattgaagggagctctacaccc 200




>54540_sly-miR159:pmrd
          Length = 177

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 66/79 (83%), Gaps = 2/79 (2%)
 Strand = Plus / Plus

                                                                       
Query: 98  gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
           |||||||||  || |||||||| ||||||||||||||   ||   |||| ||||  ||||
Sbjct: 99  gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158

                              
Query: 156 tggattgaagggagctcta 174
           |||||||||||||||||||
Sbjct: 159 tggattgaagggagctcta 177



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagctccttgaagtccaa 30
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20




>54674_tae-miR159b:pmrd
          Length = 255

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 225 ccctctttggattgaagggagctct 249




>48825_osa-miR159m:pmrd
          Length = 249

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 224 ccctctttggattgaagggagctct 248




>48819_osa-miR159a:pmrd
          Length = 272

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261




>48796_oru-miR159:pmrd
          Length = 274

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 149 ccctttttggattgaagggagctct 173
           |||| ||||||||||||||||||||
Sbjct: 237 ccctctttggattgaagggagctct 261




>48701_mtr-miR159c:pmrd
          Length = 44

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctcta 21




>48699_mtr-miR159a:pmrd
          Length = 168

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctcta 168




>48686_ltu-miR159:pmrd
          Length = 345

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctcta 21




>48395_bra-miR159a:pmrd
          Length = 185

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 109 ggcttgcatatctcaggagcttta 132
           ||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134




>48339_bna-miR159:pmrd
          Length = 183

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctcta 181



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 109 ggcttgcatatctcaggagcttta 132
           ||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132




>46932_ath-miR159b:pmrd
          Length = 196

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 aagctgctaagctatggatcc 74
          |||||||||||||||||||||
Sbjct: 47 aagctgctaagctatggatcc 67



 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tttggattgaagggagctct 173
           ||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctct 187




>46931_ath-miR159a:pmrd
          Length = 184

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 54 aagctgctaagctatggatcc 74
          |||||||||||||||||||||
Sbjct: 46 aagctgctaagctatggatcc 66



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 ttgcatatctcaggagcttta 132
           |||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 154 tttggattgaagggagctcta 174
           |||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183