miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51612_ptc-miR160e:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 aagaatggcctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaatggcctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
Query: 61 acctttctatttggcatgaggggagtcgagcaggccaatt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acctttctatttggcatgaggggagtcgagcaggccaatt 100
>51613_ptc-miR160f:pmrd
Length = 100
Score = 143 bits (72), Expect = 3e-35
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 aagaatggcctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaatggtctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
Query: 61 acctttctatttggcatgaggggagtcgagcaggcc 96
|||| |||| |||||||||||||||| |||||||
Sbjct: 61 acctctctaactggcatgaggggagtcacgcaggcc 96
>54782_vvi-miR160e:pmrd
Length = 104
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctttcta 69
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttccta 69
Query: 70 tttggcatgaggggagtcgagcaggc 95
|||||||||||||||||| |||||||
Sbjct: 70 tttggcatgaggggagtcaagcaggc 95
>54779_vvi-miR160b:pmrd
Length = 104
Score = 131 bits (66), Expect = 1e-31
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctttcta 69
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttccta 69
Query: 70 tttggcatgaggggagtcgagcaggc 95
|||||||||||||||||| |||||||
Sbjct: 70 tttggcatgaggggagtcaagcaggc 95
>46864_aqc-miR160a:pmrd
Length = 83
Score = 81.8 bits (41), Expect = 9e-17
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctttctat 70
|||||||||||||| |||||||||| |||||||||| |||| ||||| || ||||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagcttgtc-aagaatgttgacaccctttctag 59
Query: 71 ttggcatgaggggagtc 87
||||||| |||||||||
Sbjct: 60 ttggcatcaggggagtc 76
>54778_vvi-miR160a:pmrd
Length = 103
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaa 48
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatctaagaagcttgtcaa 48
>48831_osa-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54409_sbi-miR160f:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatc 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatc 23
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgaatgccatc 33
||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatc 22
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatct 34
||||||||||||||| |||||||||
Sbjct: 10 ctgcctggctccctgtatgccatct 34
>51365_ppt-miR160g:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 9 cctgcctggctccctgaatgccatctaggaagcttgtcaaa 49
||||||||||||| || ||||||||| |||||||| ||||
Sbjct: 28 cctgcctggctccttgtatgccatctgcgaagcttgacaaa 68
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
