miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51613_ptc-miR160f:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 aagaatggtctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaatggtctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
Query: 61 acctctctaactggcatgaggggagtcacgcaggcccaac 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acctctctaactggcatgaggggagtcacgcaggcccaac 100
>51612_ptc-miR160e:pmrd
Length = 100
Score = 143 bits (72), Expect = 3e-35
Identities = 90/96 (93%)
Strand = Plus / Plus
Query: 1 aagaatggtctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaatggcctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggca 60
Query: 61 acctctctaactggcatgaggggagtcacgcaggcc 96
|||| |||| |||||||||||||||| |||||||
Sbjct: 61 acctttctatttggcatgaggggagtcgagcaggcc 96
>54782_vvi-miR160e:pmrd
Length = 104
Score = 109 bits (55), Expect = 4e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctctct 68
||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 68
Query: 69 aactggcatgaggggagtcacgcaggc 95
| ||||||||||||||||| ||||||
Sbjct: 69 atttggcatgaggggagtcaagcaggc 95
>54779_vvi-miR160b:pmrd
Length = 104
Score = 109 bits (55), Expect = 4e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctctct 68
||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 68
Query: 69 aactggcatgaggggagtcacgcaggc 95
| ||||||||||||||||| ||||||
Sbjct: 69 atttggcatgaggggagtcaagcaggc 95
>46864_aqc-miR160a:pmrd
Length = 83
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagcttgtcaaagagtgttggcaacctctctaa 70
|||||||||||||| |||||||||| |||||||||| |||| ||||| || ||| ||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagcttgtc-aagaatgttgacaccctttctag 59
Query: 71 ctggcatgaggggagtcacgcag 93
|||||| |||||||||||||||
Sbjct: 60 ttggcatcaggggagtcacgcag 82
>54778_vvi-miR160a:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 8e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaa 48
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgtcaa 48
>48831_osa-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54409_sbi-miR160f:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatc 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatc 23
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatct 34
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgtatgccatct 34
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgaatgccatc 33
||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatc 22
>51365_ppt-miR160g:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaaa 49
|||||||||||| || ||||||||| |||||||| ||||
Sbjct: 29 ctgcctggctccttgtatgccatctgcgaagcttgacaaa 68
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaggaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
