miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51614_ptc-miR160g:pmrd
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gggatcaatctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggatcaatctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgact 60
Query: 61 cttcatagttggcatcagaggagtcatgcaggtccaac 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttcatagttggcatcagaggagtcatgcaggtccaac 98
>53071_ptc-miRf11249-akr:pmrd
Length = 82
Score = 163 bits (82), Expect = 3e-41
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 10 ctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgactcttcatagt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttgactcttcatagt 23
Query: 70 tggcatcagaggagtcatgcag 91
||||||||||||||||||||||
Sbjct: 22 tggcatcagaggagtcatgcag 1
>54778_vvi-miR160a:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 8e-14
Identities = 76/87 (87%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttga--ctcttca 65
||||||||||||||||| |||||| ||||||| ||||| || | | |||| ||||||
Sbjct: 8 atctgcctggctccctgaatgccatctaagaagcttgtcaag-gttgttgactctcttcc 66
Query: 66 tagttggcatcagaggagtcatgcagg 92
|||||||||||||||||||||||||||
Sbjct: 67 tagttggcatcagaggagtcatgcagg 93
>46864_aqc-miR160a:pmrd
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctggatgccaactaagaa 39
||||||||||||||||||||| |||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaa 29
>54782_vvi-miR160e:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctggatgccaactaagaa 39
|||||||||||||||| |||||| |||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaa 39
>54779_vvi-miR160b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctggatgccaactaagaa 39
|||||||||||||||| |||||| |||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaa 39
>54574_smo-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 atcaatctgcctggctccctggatgcca 31
|||| |||||||||||||||| ||||||
Sbjct: 4 atcactctgcctggctccctgtatgcca 31
