miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51615_ptc-miR160h:pmrd
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gatccctgtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatccctgtgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggc 60

                                                
Query: 61 cttggtggatggcgtgcaacgagtcatgcatgctgtga 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttggtggatggcgtgcaacgagtcatgcatgctgtga 98




>54783_vvi-miR160f:pmrd
          Length = 102

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtggat 70
          |||||||||||||| |||||||||||| ||| || | | || ||| ||||||| ||||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggat 70

               
Query: 71 ggcgt 75
          |||||
Sbjct: 71 ggcgt 75




>51609_ptc-miR160b:pmrd
          Length = 98

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgtgcctggctccctgcatgccatttgcatagctcatcagaacgtcggtggccttggtgg 68
          |||||||||||||||| |||||||||||| ||| || | || | ||| ||||||  ||||
Sbjct: 9  tgtgcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtgg 68

                 
Query: 69 atggcgt 75
          |||||||
Sbjct: 69 atggcgt 75




>54541_sly-miR160a:pmrd
          Length = 129

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 11 tgcctggctccctgcatgccatttgcatagctca 44
          |||||||||||||| |||||||||||| ||||||
Sbjct: 20 tgcctggctccctgtatgccatttgcaaagctca 53




>48542_gma-miR160a:pmrd
          Length = 119

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 9  tgtgcctggctccctgcatgccatttgcatagctcatc 46
          |||||||||||||||| |||||||||| | ||||||||
Sbjct: 19 tgtgcctggctccctgtatgccatttgtagagctcatc 56




>51610_ptc-miR160c:pmrd
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 9  tgtgcctggctccctgcatgccatttgca 37
          |||||||||||||||| ||||||||||||
Sbjct: 9  tgtgcctggctccctgtatgccatttgca 37




>48703_mtr-miR160d:pmrd
          Length = 91

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 8  gtgtgcctggctccctgcatgccatttg 35
          ||||||||||||||||| ||||||||||
Sbjct: 3  gtgtgcctggctccctgtatgccatttg 30




>54781_vvi-miR160d:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 tgcctggctccctgcatgccatttgca 37
          |||||||||||||| ||||||||||||
Sbjct: 11 tgcctggctccctgtatgccatttgca 37




>46865_aqc-miR160b:pmrd
          Length = 82

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 tgcctggctccctgcatgccatttgc 36
          |||||||||||||| |||||||||||
Sbjct: 1  tgcctggctccctgtatgccatttgc 26




>54939_zma-miR160b:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 7  tgtgtgcctggctccctgcatgcca 31
          |||||||||||||||||| ||||||
Sbjct: 17 tgtgtgcctggctccctgtatgcca 41




>51361_ppt-miR160c:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 12 gcctggctccctgcatgccatttgc 36
          |||||||||||||||||||| ||||
Sbjct: 12 gcctggctccctgcatgccacttgc 36




>48826_osa-miR160a:pmrd
          Length = 88

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 8  gtgtgcctggctccctgcatgcca 31
          ||||||||||||||||| ||||||
Sbjct: 1  gtgtgcctggctccctgtatgcca 24




>48704_mtr-miR160e:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgcatgccat 32
          |||||||||||||||| |||||||
Sbjct: 4  tgtgcctggctccctgtatgccat 27




>48702_mtr-miR160b:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgcatgccat 32
          |||||||||||||||| |||||||
Sbjct: 4  tgtgcctggctccctgtatgccat 27