miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51618_ptc-miR162c:pmrd
          Length = 107

 Score =  170 bits (86), Expect = 1e-43
 Identities = 100/107 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttaca 60
           |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 1   tgagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttaca 60

                                                          
Query: 61  cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107




>51617_ptc-miR162b:pmrd
          Length = 107

 Score =  170 bits (86), Expect = 1e-43
 Identities = 100/107 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttaca 60
           |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 1   tgagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttaca 60

                                                          
Query: 61  cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaacaacacgaaccgatcgataaacctctgcatccagtgcttccct 107




>52497_ptc-miRf10675-akr:pmrd
          Length = 105

 Score =  167 bits (84), Expect = 2e-42
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                       
Query: 2   gagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacac 61
           ||||||||||||||||||||||||||||||||||||||||||||       |||||||||
Sbjct: 105 gagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacac 46

                                                        
Query: 62  gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 106
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 1




>52244_ptc-miRf10422-akr:pmrd
          Length = 105

 Score =  167 bits (84), Expect = 2e-42
 Identities = 98/105 (93%)
 Strand = Plus / Minus

                                                                       
Query: 2   gagaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacac 61
           ||||||||||||||||||||||||||||||||||||||||||||       |||||||||
Sbjct: 105 gagaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacac 46

                                                        
Query: 62  gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 106
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gaacaacacgaaccgatcgataaacctctgcatccagtgcttccc 1




>52498_ptc-miRf10676-akr:pmrd
          Length = 101

 Score =  159 bits (80), Expect = 5e-40
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 42

                                                    
Query: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttc 104
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  acaacacgaaccgatcgataaacctctgcatccagtgcttc 1




>52243_ptc-miRf10421-akr:pmrd
          Length = 101

 Score =  159 bits (80), Expect = 5e-40
 Identities = 94/101 (93%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacga 42

                                                    
Query: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttc 104
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  acaacacgaaccgatcgataaacctctgcatccagtgcttc 1




>52400_ptc-miRf10578-akr:pmrd
          Length = 103

 Score = 89.7 bits (45), Expect = 4e-19
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
           ||||||||||||||||||||||||||||||| ||||||   |       ||||  |||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43

                                                     
Query: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
           | |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 42  aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 1




>52399_ptc-miRf10577-akr:pmrd
          Length = 103

 Score = 89.7 bits (45), Expect = 4e-19
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
           ||||||||||||||||||||||||||||||| ||||||   |       ||||  |||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 43

                                                     
Query: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
           | |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 42  aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 1




>51616_ptc-miR162a:pmrd
          Length = 107

 Score = 89.7 bits (45), Expect = 4e-19
 Identities = 86/102 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaagacactggaggcagcggttcatcgatcttttcctgaagannnnnnngttttacacga 63
           ||||||||||||||||||||||||||||||| ||||||   |       ||||  |||||
Sbjct: 4   gaagacactggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacga 63

                                                     
Query: 64  acaacacgaaccgatcgataaacctctgcatccagtgcttcc 105
           | |||| |||||||||||||||||||||||||||| ||||||
Sbjct: 64  aaaacatgaaccgatcgataaacctctgcatccagcgcttcc 105




>48493_ghr-miR162a:pmrd
          Length = 148

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 5  aagacactggaggcagcggttcatcgatcttttcctga 42
          |||||||||||||||||||||||||||||| |||||||
Sbjct: 18 aagacactggaggcagcggttcatcgatctcttcctga 55



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           ||||||||||||||||||||||||
Sbjct: 91  cgatcgataaacctctgcatccag 114




>54387_rco-miR162:pmrd
          Length = 96

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 72 cgatcgataaacctctgcatccag 95




>48423_cpa-miR162a:pmrd
          Length = 109

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||||| ||||||
Sbjct: 11 cactggaggcagcggttcatcgatctcttcctg 43



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 66  aacacgaaccgatcgataaacctctgcatccag 98
           |||| ||| ||||||||||||||||||||||||
Sbjct: 68  aacatgaatcgatcgataaacctctgcatccag 100




>54784_vvi-miR162:pmrd
          Length = 103

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43
          |||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 2  gaagtcactggatgcagcggttcatcgatctcttcctgaa 41



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccag 93




>48545_gma-miR162a:pmrd
          Length = 102

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 4  gaagacactggaggcagcggttcatcgatcttttcctgaa 43
          |||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 3  gaagtcactggatgcagcggttcatcgatctcttcctgaa 42



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 70 cgatcgataaacctctgcatccag 93




>46937_ath-miR162a:pmrd
          Length = 140

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 11 ctggaggcagcggttcatcgatcttttcctg 41
          |||||||||||||||||||||||| ||||||
Sbjct: 25 ctggaggcagcggttcatcgatctcttcctg 55



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 76  gatcgataaacctctgcatccag 98
           |||||||||||||||||||||||
Sbjct: 87  gatcgataaacctctgcatccag 109




>48834_osa-miR162a:pmrd
          Length = 171

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 75  cgatcgataaacctctgcatccagt 99
           |||||||||||||||||||||||||
Sbjct: 140 cgatcgataaacctctgcatccagt 164




>48707_mtr-miR162d:pmrd
          Length = 87

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
          ||||| |||||||||||||||||| ||||||||
Sbjct: 1  ctggatgcagcggttcatcgatctgttcctgaa 33



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccag 87




>48706_mtr-miR162c:pmrd
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
          ||||| |||||||||||||||||| ||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaa 54



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 78 tcgataaacctctgcatcca 97
          ||||||||||||||||||||
Sbjct: 20 tcgataaacctctgcatcca 1




>48705_mtr-miR162b:pmrd
          Length = 85

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 tggaggcagcggttcatcgatcttttcctgaa 43
          |||| |||||||||||||||||| ||||||||
Sbjct: 1  tggatgcagcggttcatcgatctgttcctgaa 32



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 78 tcgataaacctctgcatcca 97
          ||||||||||||||||||||
Sbjct: 66 tcgataaacctctgcatcca 85




>48682_llu-miR162:pmrd
          Length = 80

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 57 cgatcgataaacctctgcatccag 80




>47354_ath-miRf10254-akr:pmrd
          Length = 115

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 38 cgatcgataaacctctgcatccag 15



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 11  ctggaggcagcggttcatcgatc 33
           |||||||||||||||||||||||
Sbjct: 102 ctggaggcagcggttcatcgatc 80




>46938_ath-miR162b:pmrd
          Length = 111

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 75 cgatcgataaacctctgcatccag 98
          ||||||||||||||||||||||||
Sbjct: 76 cgatcgataaacctctgcatccag 99



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 ctggaggcagcggttcatcgatc 33
          |||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34




>54948_zma-miR162b:pmrd
          Length = 130

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 78  tcgataaacctctgcatccag 98
           |||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130




>54542_sly-miR162:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99




>48685_lsa-miR162:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 1  tcgataaacctctgcatccag 21




>48546_gma-miR162m:pmrd
          Length = 367

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 1  tcgataaacctctgcatccag 21




>48836_osa-miR162m:pmrd
          Length = 114

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           |||||||||| |||||||||||||
Sbjct: 91  cgatcgataagcctctgcatccag 114




>48835_osa-miR162b:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  cgatcgataaacctctgcatccag 98
           |||||||||| |||||||||||||
Sbjct: 101 cgatcgataagcctctgcatccag 124




>48690_mdo-miR162:pmrd
          Length = 88

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 11 ctggaggcagcggttcatcgatct 34
          ||||||||| ||||||||||||||
Sbjct: 1  ctggaggcatcggttcatcgatct 24