miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51862_ptc-miRf10040-akr:pmrd
          Length = 91

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                      
Query: 1  ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 28

                                   
Query: 61 cgcgctcttcttctccaacacgggc 85
          |||||||||||||||||||||||||
Sbjct: 27 cgcgctcttcttctccaacacgggc 3




>51619_ptc-miR164a:pmrd
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggttccttgctggagaagcagggcacgtgcaaaatcctgatgaagtgcttacactttgca 60

                                   
Query: 61 cgcgctcttcttctccaacacgggc 85
          |||||||||||||||||||||||||
Sbjct: 61 cgcgctcttcttctccaacacgggc 85




>51622_ptc-miR164d:pmrd
          Length = 99

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 9  gctggagaagcagggcacgtgcaaaatcct 38
          ||||||||||||||||||||||||||||||
Sbjct: 9  gctggagaagcagggcacgtgcaaaatcct 38




>51621_ptc-miR164c:pmrd
          Length = 82

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 6  cttgctggagaagcagggcacgtgcaa 32
          |||||||||||||||||||||||||||
Sbjct: 6  cttgctggagaagcagggcacgtgcaa 32




>48547_gma-miR164:pmrd
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 4  tccttgctggagaagcagggcacgtgcaa 32
          |||||| ||||||||||||||||||||||
Sbjct: 4  tccttgttggagaagcagggcacgtgcaa 32



 Score = 38.2 bits (19), Expect = 0.001
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 54 ctttgcacgcgctcttcttctccaacacggg 84
          ||||||||| ||||  |||||||||||||||
Sbjct: 62 ctttgcacgtgctccccttctccaacacggg 92




>48419_cav-miR164:pmrd
          Length = 95

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 4  tccttgctggagaagcagggcacgtgcaa 32
          |||||| ||||||||||||||||||||||
Sbjct: 4  tccttgttggagaagcagggcacgtgcaa 32




>54785_vvi-miR164a:pmrd
          Length = 121

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  tccttgctggagaagcagggcacgtgca 31
          |||||| |||||||||||||||||||||
Sbjct: 4  tccttgttggagaagcagggcacgtgca 31




>48708_mtr-miR164a:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 6  cttgctggagaagcagggcacgtgcaaa 33
          |||| |||||||||||||||||||||||
Sbjct: 1  cttgttggagaagcagggcacgtgcaaa 28




>54952_zma-miR164d:pmrd
          Length = 216

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gctggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 18 gctggagaagcagggcacgtgca 40




>54949_zma-miR164a:pmrd
          Length = 152

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  gctggagaagcagggcacgtgca 31
          |||||||||||||||||||||||
Sbjct: 17 gctggagaagcagggcacgtgca 39




>54411_sbi-miR164b:pmrd
          Length = 111

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 18 tgctggagaagcagggcacgtgc 40




>48841_osa-miR164d:pmrd
          Length = 94

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  tgctggagaagcagggcacgtgc 30
          |||||||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcacgtgc 30




>48710_mtr-miR164c:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 6  cttgctggagaagcagggcacgtgcaa 32
          |||| ||||||||||||||||||||||
Sbjct: 1  cttgttggagaagcagggcacgtgcaa 27




>48398_bra-miR164a:pmrd
          Length = 92

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 10 tggagaagcagggcacgtgcaaa 32




>48341_bna-miR164:pmrd
          Length = 86

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 7  tggagaagcagggcacgtgcaaa 29




>47540_ath-miRf10440-akr:pmrd
          Length = 113

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 95 tggagaagcagggcacgtgcaaa 73




>47539_ath-miRf10439-akr:pmrd
          Length = 115

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 96 tggagaagcagggcacgtgcaaa 74




>46940_ath-miR164a:pmrd
          Length = 113

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tggagaagcagggcacgtgcaaa 33
          |||||||||||||||||||||||
Sbjct: 19 tggagaagcagggcacgtgcaaa 41




>54788_vvi-miR164d:pmrd
          Length = 118

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 6  cttgctggagaagcagggcacgtgca 31
          |||| |||||||||||||||||||||
Sbjct: 6  cttgatggagaagcagggcacgtgca 31




>48840_osa-miR164c:pmrd
          Length = 119

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 6  cttgctggagaagcagggcacgtgcaaaat 35
          |||| ||||||||||||| |||||||||||
Sbjct: 6  cttgttggagaagcagggtacgtgcaaaat 35




>48709_mtr-miR164b:pmrd
          Length = 144

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tggagaagcagggcacgtgcaa 32
          ||||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgcaa 27




>54956_zma-miR164h:pmrd
          Length = 96

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54955_zma-miR164g:pmrd
          Length = 116

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54954_zma-miR164f:pmrd
          Length = 177

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54953_zma-miR164e:pmrd
          Length = 242

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 4  tggagaagcagggcacgtgca 24




>54951_zma-miR164c:pmrd
          Length = 270

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 18 tggagaagcagggcacgtgca 38




>54950_zma-miR164b:pmrd
          Length = 128

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 21 tggagaagcagggcacgtgca 41




>54787_vvi-miR164c:pmrd
          Length = 97

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>54676_tae-miR164b:pmrd
          Length = 152

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54414_sbi-miR164e:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>54413_sbi-miR164d:pmrd
          Length = 160

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>54410_sbi-miR164:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>53142_ptc-miRf11320-akr:pmrd
          Length = 167

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35




>52901_ptc-miRf11079-akr:pmrd
          Length = 171

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 15 tggagaagcagggcacgtgca 35




>51624_ptc-miR164f:pmrd
          Length = 90

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 8  tgctggagaagcagggcacgtgcaaaatc 36
          ||||||||||||||||||| ||| |||||
Sbjct: 8  tgctggagaagcagggcacatgctaaatc 36




>51623_ptc-miR164e:pmrd
          Length = 155

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51620_ptc-miR164b:pmrd
          Length = 162

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>51348_ppl-miR164:pmrd
          Length = 159

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgca 31




>50414_osa-miRf11199-akr:pmrd
          Length = 146

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 13 tggagaagcagggcacgtgca 33




>48843_osa-miR164f:pmrd
          Length = 210

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 24 tggagaagcagggcacgtgca 44




>48839_osa-miR164b:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 9  tggagaagcagggcacgtgca 29




>48838_osa-miR164a:pmrd
          Length = 156

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 17 tggagaagcagggcacgtgca 37




>48473_csi-miR164:pmrd
          Length = 168

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 1  tggagaagcagggcacgtgca 21




>47347_ath-miRf10247-akr:pmrd
          Length = 159

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 6  tggagaagcagggcacgtgca 26




>46942_ath-miR164c:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 6  cttgctggagaagcagggcacgtgc 30
          |||| ||||||||||||||||||||
Sbjct: 6  cttgatggagaagcagggcacgtgc 30




>46941_ath-miR164b:pmrd
          Length = 153

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tggagaagcagggcacgtgca 31
          |||||||||||||||||||||
Sbjct: 3  tggagaagcagggcacgtgca 23




>54786_vvi-miR164b:pmrd
          Length = 93

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 8  tgctggagaagcagggcac 26
          |||||||||||||||||||
Sbjct: 8  tgctggagaagcagggcac 26




>48842_osa-miR164e:pmrd
          Length = 132

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 11 tggagaagcagggcacgtg 29
          |||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtg 29