miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51624_ptc-miR164f:pmrd
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgagccatgctggagaagcagggcacatgctaaatctatcagcttgaaagtctgatagtt 60
Query: 61 ttgcatgtgctctatctctccagcttggac 90
||||||||||||||||||||||||||||||
Sbjct: 61 ttgcatgtgctctatctctccagcttggac 90
>54786_vvi-miR164b:pmrd
Length = 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 ccatgctggagaagcagggcacatgct 31
|||||||||||||||||||||||||||
Sbjct: 5 ccatgctggagaagcagggcacatgct 31
>51862_ptc-miRf10040-akr:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 8 tgctggagaagcagggcacatgctaaatc 36
||||||||||||||||||| ||| |||||
Sbjct: 80 tgctggagaagcagggcacgtgcaaaatc 52
>51619_ptc-miR164a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgctaaatc 36
||||||||||||||||||| ||| |||||
Sbjct: 8 tgctggagaagcagggcacgtgcaaaatc 36
>48841_osa-miR164d:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 3 agccatgctggagaagcagggcacatgct 31
|||||||||||||||| || |||||||||
Sbjct: 92 agccatgctggagaaggagcgcacatgct 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgct 31
||||||||||||||||||| ||||
Sbjct: 8 tgctggagaagcagggcacgtgct 31
>54411_sbi-miR164b:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tgctggagaagcagggcacatgct 31
||||||||||||||||||| ||||
Sbjct: 18 tgctggagaagcagggcacgtgct 41
>51622_ptc-miR164d:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 9 gctggagaagcagggcacatgctaaatc 36
|||||||||||||||||| ||| |||||
Sbjct: 9 gctggagaagcagggcacgtgcaaaatc 36
