miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>52000_ptc-miRf10178-akr:pmrd
          Length = 95

 Score =  180 bits (91), Expect = 1e-46
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 61

                                         
Query: 61 gactagatcatgtggcagtttcacctattga 91
          |||||||||||||||||||||||||||||||
Sbjct: 62 gactagatcatgtggcagtttcacctattga 92




>51649_ptc-miR167h:pmrd
          Length = 91

 Score =  180 bits (91), Expect = 1e-46
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cgctattagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaa 60

                                         
Query: 61 gactagatcatgtggcagtttcacctattga 91
          |||||||||||||||||||||||||||||||
Sbjct: 61 gactagatcatgtggcagtttcacctattga 91




>51646_ptc-miR167e:pmrd
          Length = 91

 Score =  129 bits (65), Expect = 4e-31
 Identities = 80/85 (94%)
 Strand = Plus / Plus

                                                                      
Query: 7  tagttgaagctgccaacatgatctgagctttccttaattttcctatacaggaaagactag 66
          ||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 7  tagttgaagctgccagcatgatctgaactttccttaattttcctatacgggaaagactag 66

                                   
Query: 67 atcatgtggcagtttcacctattga 91
          ||||||||| ||||||| |||||||
Sbjct: 67 atcatgtggtagtttcatctattga 91




>54798_vvi-miR167b:pmrd
          Length = 99

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 54 caggaaagactagatcatgtggcagtttcacctattga 91
          ||||||||||||||||||||||||||||||||| ||||
Sbjct: 58 caggaaagactagatcatgtggcagtttcacctgttga 95



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 8  agttgaagctgccaacatgatctgagcttt 37
          |||||||||||||| |||||||| ||||||
Sbjct: 8  agttgaagctgccagcatgatctaagcttt 37




>48678_lja-miR167:pmrd
          Length = 108

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 7  tagttgaagctgccaacatgatctgagctttcctt 41
          ||||||||||||||| |||||||||||||| ||||
Sbjct: 17 tagttgaagctgccagcatgatctgagcttacctt 51




>48420_cle-miR167:pmrd
          Length = 96

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 7  tagttgaagctgccaacatgatctgagctttcctt 41
          ||||||||||||||| |||||||||| ||||||||
Sbjct: 7  tagttgaagctgccagcatgatctgaactttcctt 41




>51648_ptc-miR167g:pmrd
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 55 aggaaagactagatcatgtggcagtttcacct 86
          ||||||||  ||||||||||||||||||||||
Sbjct: 50 aggaaagaacagatcatgtggcagtttcacct 81



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 3  ctattagttgaagctgccaacatgatct 30
          |||| |||||||||||||| ||||||||
Sbjct: 3  ctatcagttgaagctgccagcatgatct 30




>54801_vvi-miR167e:pmrd
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 agatcatgtggcagtttcacct 86
          ||||||||||||||||||||||
Sbjct: 60 agatcatgtggcagtttcacct 81



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 3  ctattagttgaagctgccaacatgatct 30
          |||| |||||||||||||| ||||||||
Sbjct: 3  ctatcagttgaagctgccagcatgatct 30




>54545_sly-miR167:pmrd
          Length = 116

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 8  agttgaagctgccaacatgatctgagctttcctt 41
          |||||||||||||| |||||||| | ||||||||
Sbjct: 16 agttgaagctgccagcatgatctaaactttcctt 49




>51647_ptc-miR167f:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 3  ctattagttgaagctgccaacatgatctgagctttcct 40
          |||| |||||||||||||| |||||||| ||| |||||
Sbjct: 3  ctatcagttgaagctgccagcatgatcttagccttcct 40



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 65 agatcatgtggcagtttcacct 86
          ||||||||||||||||||||||
Sbjct: 61 agatcatgtggcagtttcacct 82




>54989_zma-miR167l:pmrd
          Length = 80

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 11 tgaagctgccaacatgatctgagctttc 38
          ||||||||||| |||||||||| |||||
Sbjct: 1  tgaagctgccagcatgatctgatctttc 28




>54983_zma-miR167f:pmrd
          Length = 119

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 11 tgaagctgccaacatgatctgagctttc 38
          ||||||||||| |||||||||| |||||
Sbjct: 21 tgaagctgccagcatgatctgatctttc 48