miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51671_ptc-miR169n:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgccgcagatgcatggtccttgctgctgatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagtggatttgagccaaggatgacttgccgcagatgcatggtccttgctgctgatcaca 60
Query: 61 taccaaggggggttttgggtggcaagcatccttggttctccttcgct 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccaaggggggttttgggtggcaagcatccttggttctccttcgct 107
>52490_ptc-miRf10668-akr:pmrd
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccgcagatgcatggtccttgctgctgatcacataccaaggggg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagccaaggatgacttgccgcagatgcatggtccttgctgctgatcacataccaaggggg 60
Query: 72 gttttgggtggcaagcatccttggttc 98
|||||||||||||||||||||||||||
Sbjct: 61 gttttgggtggcaagcatccttggttc 87
>54817_vvi-miR169o:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgc 32
|||||||||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccgc 32
>54818_vvi-miR169p:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>54814_vvi-miR169l:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>54815_vvi-miR169m:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agagtggatttgagccaaggatgacttgccg 31
|||||||| |||||||||||||||||||||
Sbjct: 1 agagtggaagtgagccaaggatgacttgccg 31
>46965_ath-miR169f:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggatttgagccaaggatgacttgccg 31
|||| ||||||||||||||||||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52
>54816_vvi-miR169n:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 gagtggatttgagccaaggatgacttgccg 31
||||||| | ||||||||||||||||||||
Sbjct: 2 gagtggaatagagccaaggatgacttgccg 31
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 19 ttgagccaaggatgacttgccg 40
>46967_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>46966_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>46964_ath-miR169e:pmrd
Length = 217
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 68 ttgagccaaggatgacttgccg 89
>46963_ath-miR169d:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 40 ttgagccaaggatgacttgccg 61
>54821_vvi-miR169s:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 agtggatttgagccaaggatgacttgccg 31
|||||||| |||||||||||||||||||
Sbjct: 4 agtggattgcagccaaggatgacttgccg 32
>54805_vvi-miR169c:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccgcagatg 37
||||||||||||||||||| |||||
Sbjct: 14 agccaaggatgacttgccggagatg 38
>54823_vvi-miR169u:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||| ||||||||||||||||
Sbjct: 4 gtggaattgagtcaaggatgacttgccg 31
>54820_vvi-miR169r:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||| ||||||||||||||||
Sbjct: 4 gtggaattgagtcaaggatgacttgccg 31
>54819_vvi-miR169q:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccg 31
||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccg 31
>54811_vvi-miR169i:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| ||||||||||||||||| ||||
Sbjct: 4 gtggaattgagccaaggatgactggccg 31
>54810_vvi-miR169h:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||| |||||||||||||| |||||||
Sbjct: 4 gtggaattgagccaaggatggcttgccg 31
