miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51674_ptc-miR169q:pmrd
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcttgttagttagccaaggacgacttgcctgttcctagcaatttgggatttgccctggac 60
Query: 61 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taagaggcaggaccctcattccgggtttcaggcagtctccttggctaggttgaca 115
>54548_sly-miR169b:pmrd
Length = 205
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 10 ggtttcaggcagtctccttggcta 33
>48361_bna-miR169l:pmrd
Length = 199
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 151 ggtttcaggcagtctccttggcta 174
>48359_bna-miR169j:pmrd
Length = 167
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 135 ggtttcaggcagtctccttggcta 158
>46970_ath-miR169j:pmrd
Length = 221
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
||||||||||||||||||||||||
Sbjct: 173 ggtttcaggcagtctccttggcta 196
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 96 gtttcaggcagtctccttggcta 118
>51666_ptc-miR169i:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 92 gtttcaggcagtctccttggcta 114
>48358_bna-miR169i:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 138 gtttcaggcagtctccttggcta 160
>48354_bna-miR169e:pmrd
Length = 276
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 gtttcaggcagtctccttggcta 107
|||||||||||||||||||||||
Sbjct: 1 gtttcaggcagtctccttggcta 23
>51670_ptc-miR169m:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 gggtttcaggcagtctccttggcta 107
||||||||||| |||||||||||||
Sbjct: 86 gggtttcaggcggtctccttggcta 110
>55013_zma-miR169k:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 95 caggcagtctccttggctag 114
>55012_zma-miR169j:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 114 caggcagtctccttggctag 133
>54443_sbi-miR169g:pmrd
Length = 152
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 115 caggcagtctccttggctag 134
>54442_sbi-miR169f:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 110 caggcagtctccttggctag 129
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 cttgttagttagccaaggacgacttgcc 29
|||||| | |||||||||||||||||||
Sbjct: 15 cttgtttggtagccaaggacgacttgcc 42
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 cttgttagttagccaaggacgacttgcc 29
|||||| | |||||||||||||||||||
Sbjct: 15 cttgtttggtagccaaggacgacttgcc 42
>51678_ptc-miR169u:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tagccaaggacgacttgcct 30
||||||||||||||||||||
Sbjct: 11 tagccaaggacgacttgcct 30
>51668_ptc-miR169k:pmrd
Length = 203
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 tcttgttagttagccaaggacgacttgcctgt 32
||||||| | |||||||||| |||||||||||
Sbjct: 1 tcttgtttggtagccaaggatgacttgcctgt 32
>51667_ptc-miR169j:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 111 caggcagtctccttggctag 130
>51657_ptc-miR169ae:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 cttgttagttagccaaggacgacttgcc 29
|||||| | |||||||||||||||||||
Sbjct: 1 cttgtttggtagccaaggacgacttgcc 28
>51654_ptc-miR169ab:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2 cttgttagttagccaaggacgacttgcc 29
|||||| | |||||||||||||||||||
Sbjct: 1 cttgtttggtagccaaggacgacttgcc 28
>48888_osa-miR169m:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 109 caggcagtctccttggctag 128
>48886_osa-miR169k:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 127 caggcagtctccttggctag 146
>48885_osa-miR169j:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 caggcagtctccttggctag 108
||||||||||||||||||||
Sbjct: 96 caggcagtctccttggctag 115
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 tcaggcagtctccttggcta 107
||||||||||||||||||||
Sbjct: 40 tcaggcagtctccttggcta 21
>46974_ath-miR169n:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
|||||||||||||||| |||||||
Sbjct: 168 ggtttcaggcagtctctttggcta 191
>46973_ath-miR169m:pmrd
Length = 212
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 tcaggcagtctccttggcta 107
||||||||||||||||||||
Sbjct: 150 tcaggcagtctccttggcta 169
>46972_ath-miR169l:pmrd
Length = 211
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 84 ggtttcaggcagtctccttggcta 107
|||||||||||||||| |||||||
Sbjct: 167 ggtttcaggcagtctctttggcta 190
>46971_ath-miR169k:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 tcaggcagtctccttggcta 107
||||||||||||||||||||
Sbjct: 149 tcaggcagtctccttggcta 168
>46969_ath-miR169i:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 tcaggcagtctccttggcta 107
||||||||||||||||||||
Sbjct: 146 tcaggcagtctccttggcta 165
>46968_ath-miR169h:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 tcaggcagtctccttggcta 107
||||||||||||||||||||
Sbjct: 127 tcaggcagtctccttggcta 146
