miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51679_ptc-miR169v:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cgtgtttggtagccaaggatgacttgcccactccattgaaagagtttttcaagcatatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtgtttggtagccaaggatgacttgcccactccattgaaagagtttttcaagcatatgg 60
Query: 61 tagtgtagaacttttctttggttctgggcagtcatcttggctatgctgac 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtgtagaacttttctttggttctgggcagtcatcttggctatgctgac 110
>51680_ptc-miR169w:pmrd
Length = 109
Score = 83.8 bits (42), Expect = 2e-17
Identities = 94/110 (85%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 cgtgtttggtagccaaggatgacttgcccactccattgaaagagtttttcaagcatatgg 60
||||||||||||||||||||||||||||||||| || ||||||| || ||||||| | ||
Sbjct: 1 cgtgtttggtagccaaggatgacttgcccactctatggaaagag-ttctcaagcacacgg 59
Query: 61 tagtgtagaacttttctttggttctgggcagtcatcttggctatgctgac 110
|| | || | || ||| || |||||||||||| |||||||||||||||
Sbjct: 60 cagagaggacccttacttcggctctgggcagtcaccttggctatgctgac 109
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccactccattg 38
|||||||||||||||||||||||||| ||||||||
Sbjct: 8 tgtttggtagccaaggatgacttgcctgctccattg 43
>51666_ptc-miR169i:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccactccattg 38
|||||||||||||||||||||||||| ||||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcctgctccattg 39
>51670_ptc-miR169m:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcc 29
>51668_ptc-miR169k:pmrd
Length = 203
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||||
Sbjct: 4 tgtttggtagccaaggatgacttgcc 29
>48487_ghb-miR169a:pmrd
Length = 189
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||||
Sbjct: 43 tgtttggtagccaaggatgacttgcc 68
>53831_ptc-miRf12009-akr:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 17 tgtttggtagccaaggacgacttgcccac 45
>53746_ptc-miRf11924-akr:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 17 tgtttggtagccaaggacgacttgcccac 45
>51675_ptc-miR169r:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 gtttggtagccaaggatgacttgcc 28
|||||||||||||||||||||||||
Sbjct: 5 gtttggtagccaaggatgacttgcc 29
>51658_ptc-miR169af:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>51657_ptc-miR169ae:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>51654_ptc-miR169ab:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
||||||||||||||||| |||||||||||
Sbjct: 3 tgtttggtagccaaggacgacttgcccac 31
>54548_sly-miR169b:pmrd
Length = 205
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 166 tttggtagccaaggatgacttgcc 189
>54440_sbi-miR169d:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39
>54439_sbi-miR169c:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcc 39
>48361_bna-miR169l:pmrd
Length = 199
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cgtgtttggtagccaaggatgacttgcc 28
||||||| ||||||||||||||||||||
Sbjct: 16 cgtgtttagtagccaaggatgacttgcc 43
>48355_bna-miR169f:pmrd
Length = 201
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 26 tttggtagccaaggatgacttgcc 49
>48354_bna-miR169e:pmrd
Length = 276
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 246 tttggtagccaaggatgacttgcc 269
>48353_bna-miR169d:pmrd
Length = 220
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58
>48352_bna-miR169c:pmrd
Length = 176
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 21 tttggtagccaaggatgacttgcc 44
>46973_ath-miR169m:pmrd
Length = 212
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 37 tttggtagccaaggatgacttgcc 60
>46971_ath-miR169k:pmrd
Length = 213
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 38 tttggtagccaaggatgacttgcc 61
>46969_ath-miR169i:pmrd
Length = 206
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcc 58
>46873_aqc-miR169a:pmrd
Length = 158
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 cgtgtttggtagccaaggatgacttgcc 28
||||||| ||||||||||||||||||||
Sbjct: 17 cgtgtttagtagccaaggatgacttgcc 44
>48359_bna-miR169j:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 gtgtttggtagccaaggatgacttgcc 28
|||||| ||||||||||||||||||||
Sbjct: 1 gtgtttagtagccaaggatgacttgcc 27
>55013_zma-miR169k:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcc 39
>55011_zma-miR169i:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcc 39
>55009_zma-miR169g:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcc 39
>54827_vvi-miR169y:pmrd
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||||||||| ||||||||||||||
Sbjct: 4 tgtttggtagcgaaggatgacttgcc 29
>54826_vvi-miR169x:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 9 tggtagccaaggatgacttgcc 30
>54442_sbi-miR169f:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcc 39
>54441_sbi-miR169e:pmrd
Length = 240
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcc 39
>51669_ptc-miR169l:pmrd
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
|||||| |||||||||||||||||||
Sbjct: 4 tgtttgatagccaaggatgacttgcc 29
>51667_ptc-miR169j:pmrd
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
|||||| |||||||||||||||||||
Sbjct: 4 tgtttgatagccaaggatgacttgcc 29
>48888_osa-miR169m:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcc 29
>48885_osa-miR169j:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcc 29
>48884_osa-miR169i:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcc 29
>48883_osa-miR169h:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcc 29
>48882_osa-miR169g:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgcc 29
>48360_bna-miR169k:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 31 tggtagccaaggatgacttgcc 52
>48358_bna-miR169i:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||| ||||||||||||||||||||
Sbjct: 8 tgtttagtagccaaggatgacttgcc 33
>48357_bna-miR169h:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 34 tggtagccaaggatgacttgcc 55
>48356_bna-miR169g:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 34 tggtagccaaggatgacttgcc 55
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 124 tggtagccaaggatgacttgcc 103
>46974_ath-miR169n:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||| ||||||||||||||||||||
Sbjct: 38 tgtttagtagccaaggatgacttgcc 63
>46970_ath-miR169j:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcc 28
||||| ||||||||||||||||||||
Sbjct: 44 tgtttagtagccaaggatgacttgcc 69
>46968_ath-miR169h:pmrd
Length = 190
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tggtagccaaggatgacttgcc 28
||||||||||||||||||||||
Sbjct: 43 tggtagccaaggatgacttgcc 64
>54550_sly-miR169d:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcccactccatt 37
|||||||||||||||||||| ||| ||||
Sbjct: 38 gtagccaaggatgacttgcctacttcatt 66
>54450_sbi-miR169n:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ggtagccaaggatgacttgcc 28
|||||||||||||||||||||
Sbjct: 1 ggtagccaaggatgacttgcc 21
>51656_ptc-miR169ad:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 tgtttggtagccaaggatgacttgcccac 31
|||| |||||||||||| |||||||||||
Sbjct: 3 tgttcggtagccaaggacgacttgcccac 31
>48881_osa-miR169f:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 8 ggtagccaaggatgacttgcc 28
|||||||||||||||||||||
Sbjct: 9 ggtagccaaggatgacttgcc 29
>55019_zma-miR169q:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 4 gtagccaaggatgacttgcc 23
>55018_zma-miR169p:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 2 gtagccaaggatgacttgcc 21
>55017_zma-miR169o:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 123 gtagccaaggatgacttgcc 142
>55016_zma-miR169n:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 1 gtagccaaggatgacttgcc 20
>55008_zma-miR169f:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 20 gtagccaaggatgacttgcc 39
>54446_sbi-miR169j:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 2 gtagccaaggatgacttgcc 21
>48890_osa-miR169o:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||| ||||||||||
Sbjct: 6 tttggtagccaagaatgacttgcc 29
>48889_osa-miR169n:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tttggtagccaaggatgacttgcc 28
||||||||||||| ||||||||||
Sbjct: 6 tttggtagccaagaatgacttgcc 29
>48880_osa-miR169e:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 10 gtagccaaggatgacttgcc 29
>48310_bdi-miR169b:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 9 gtagccaaggatgacttgcc 28
||||||||||||||||||||
Sbjct: 18 gtagccaaggatgacttgcc 37
>48309_bdi-miR169a:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 agccaaggatgacttgcccactcc 34
|||||||||||||||||| |||||
Sbjct: 17 agccaaggatgacttgccgactcc 40
