miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51687_ptc-miR171d:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 aaaagaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaagaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaa 60
Query: 61 atccgatctcagattgagccgcgccaatatcacttttcag 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atccgatctcagattgagccgcgccaatatcacttttcag 100
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 184 bits (93), Expect = 8e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 5 gaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatcc 60
Query: 65 gatctcagattgagccgcgccaatatcactttt 97
|||||||||||||||||||||||||||||||||
Sbjct: 61 gatctcagattgagccgcgccaatatcactttt 93
>51686_ptc-miR171c:pmrd
Length = 104
Score = 125 bits (63), Expect = 6e-30
Identities = 91/100 (91%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 1 aaaagaaagcgatgttggtgaggttcaatccgaagacagatttacacg----agtgaaag 56
||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |
Sbjct: 1 aaaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattg 60
Query: 57 taaaatccgatctcagattgagccgcgccaatatcacttt 96
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 taaaatacgatctcagattgagccgcgccaatatcacttt 100
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 119 bits (60), Expect = 4e-28
Identities = 88/97 (90%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 4 agaaagcgatgttggtgaggttcaatccgaagacagatttacacg----agtgaaagtaa 59
|||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||
Sbjct: 1 agaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaa 60
Query: 60 aatccgatctcagattgagccgcgccaatatcacttt 96
||| |||||||||||||||||||||||||||||||||
Sbjct: 61 aatacgatctcagattgagccgcgccaatatcacttt 97
>54833_vvi-miR171f:pmrd
Length = 103
Score = 97.6 bits (49), Expect = 1e-21
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 aagaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaat 62
|||||||||||||||||||||||||||| ||||| |||||| | |||| ||||||
Sbjct: 4 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgct--tgaatgtaaaaa 61
Query: 63 ccgatctcagattgagccgcgccaatatcacttttc 98
| ||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgatctcagattgagccgcgccaatatcacttttc 97
>54832_vvi-miR171e:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 5e-15
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 2 aaagaaagcgatgttggtgaggttcaatccgaagacagatttac-acgagtgaaagtaaa 60
|||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct: 3 aaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagag---ccgtaaa 59
Query: 61 atccgatctcagattgagccgcgccaatatcacttt 96
||||||| |||||||||||||||||||||||||
Sbjct: 60 gaacgatctctgattgagccgcgccaatatcacttt 95
>54554_sly-miR171d:pmrd
Length = 112
Score = 65.9 bits (33), Expect = 5e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 7 aagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccga 66
||||||||||||||||||||||||||||||| ||||| | | ||||| |||
Sbjct: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
Query: 67 tctcagattgagccgcgccaatatcactt 95
|||||||||||||||||||||||||||||
Sbjct: 68 tctcagattgagccgcgccaatatcactt 96
>48497_ghr-miR171:pmrd
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 56 gtaaaatccgatctcagattgagccgcgccaatatc 91
||||||| ||||||||||||||||||||||||||||
Sbjct: 50 gtaaaatacgatctcagattgagccgcgccaatatc 85
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 11 gatgttggtgaggttcaatccgaagacagatttac 45
||||||||||||||||||||||||||| |||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttac 35
>51383_ppt-miR171b:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 ctcagattgagccgcgccaatatcac 93
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>51382_ppt-miR171a:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 69 tcagattgagccgcgccaatatcac 93
|||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85
>54461_sbi-miR171j:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatcactt 95
||||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcactt 107
>54582_smo-miR171d:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 67 tctcagattgagccgcgccaatatcac 93
||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91
>54553_sly-miR171c:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatcac 93
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>48895_osa-miR171a:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 agcgatgttggtgaggttcaatccga 33
|||||| |||||||||||||||||||
Sbjct: 7 agcgatattggtgaggttcaatccga 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatca 92
|||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatca 22
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatca 92
|||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatca 22
>55028_zma-miR171a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>55027_zma-miR170p:pmrd
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 43 gattgagccgcgccaatatc 62
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54579_smo-miR171a:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 agattgagccgcgccaatatcact 94
||||||||||| ||||||||||||
Sbjct: 102 agattgagccgtgccaatatcact 125
>54458_sbi-miR171g:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>54451_sbi-miR170:pmrd
Length = 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 36 gattgagccgcgccaatatc 55
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51342_ppd-miR170:pmrd
Length = 297
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 278 gattgagccgcgccaatatc 297
>48636_gra-miR171:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 186 gattgagccgcgccaatatc 205
>48407_bra-miR171e:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>48313_bdi-miR171d:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 82 gattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>46982_ath-miR171o:pmrd
Length = 339
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 320 gattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46980_ath-miR171m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>46976_ath-miR170n:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatatc 172
>46975_ath-miR170m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 197 gattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatatc 215
>46851_ace-miR171a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46850_ace-miR170d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatatc 215
>46849_ace-miR170c:pmrd
Length = 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 57 gattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 gattgagccgcgccaatatc 91
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
