miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54540_sly-miR159:pmrd
Length = 177
Score = 351 bits (177), Expect = 1e-97
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
Query: 61 attcctcagccctatctatttatgatttcaaacatatagataggttttgggtttgcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcctcagccctatctatttatgatttcaaacatatagataggttttgggtttgcatat 120
Query: 121 gtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctcta 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcaggagctttattttaccctttgtttgatcattttttggattgaagggagctcta 177
>51603_ptc-miR159b:pmrd
Length = 187
Score = 60.0 bits (30), Expect = 6e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 113 ttgcatatgtcaggagctttattttaccctttgtttgatcattttttggattgaagggag 172
|||||||| |||||||||||||| ||| |||| |||| |||||||||||||||||||
Sbjct: 116 ttgcatatctcaggagctttatt--acctaatgttagatctttttttggattgaagggag 173
Query: 173 ctcta 177
|||||
Sbjct: 174 ctcta 178
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaa 30
>54777_vvi-miR159c:pmrd
Length = 190
Score = 56.0 bits (28), Expect = 9e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
|||||||||||||||||||| | | ||| || || || |||||||||||||| |||||
Sbjct: 9 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 68
Query: 61 attcctcagccctatc 76
|| || ||||||||||
Sbjct: 69 atcccacagccctatc 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctcta 180
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 99 gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158
||||||||| || |||||||| |||||||||||||| || |||| |||| ||||
Sbjct: 93 gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 150
Query: 159 tggattgaagggagctcta 177
|||||||||||||||||||
Sbjct: 151 tggattgaagggagctcta 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 6 tggagctccttgaagtccaa 25
>51604_ptc-miR159c:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 99 gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158
||||||||| || |||||||| |||||||||||||| || |||| |||| ||||
Sbjct: 98 gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
Query: 159 tggattgaagggagctcta 177
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaa 30
>51602_ptc-miR159a:pmrd
Length = 183
Score = 48.1 bits (24), Expect = 2e-06
Identities = 66/79 (83%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 99 gataggttttgggtttgcatatgtcaggagctttattttaccctttgtttgatcattttt 158
||||||||| || |||||||| |||||||||||||| || |||| |||| ||||
Sbjct: 98 gataggtttgcggcttgcatatctcaggagctttattg--cctaatgttagatccctttt 155
Query: 159 tggattgaagggagctcta 177
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctcta 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaa 30
>54378_pvu-miR159:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 2 tggagctccttgaagtccaa 21
>54377_pvu-miR159:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 153 tttggattgaagggagctcta 173
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 2 tggagctccttgaagtccaa 21
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>48699_mtr-miR159a:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 148 tttggattgaagggagctcta 168
>48686_ltu-miR159:pmrd
Length = 345
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctcta 21
>48539_gma-miR159a:pmrd
Length = 214
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 175 tttggattgaagggagctcta 195
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 21 tggagctccttgaagtccaa 40
>48395_bra-miR159a:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183
>48339_bna-miR159:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctcta 181
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctcta 177
|||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctcta 183
>54937_zma-miR159m:pmrd
Length = 457
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54931_zma-miR159b:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 182 tttggattgaagggagctct 201
>54930_zma-miR159a:pmrd
Length = 246
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 207 tttggattgaagggagctct 226
>54674_tae-miR159b:pmrd
Length = 255
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 230 tttggattgaagggagctct 249
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54653_spr-miR159:pmrd
Length = 392
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>54631_sof-miR159d:pmrd
Length = 265
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 226 tttggattgaagggagctct 245
>54629_sof-miR159b:pmrd
Length = 266
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 227 tttggattgaagggagctct 246
>54628_sof-miR159a:pmrd
Length = 265
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 226 tttggattgaagggagctct 245
>54392_sar-miR159:pmrd
Length = 175
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 155 tttggattgaagggagctct 174
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 152 cattttttggattgaagggagctc 175
||||| ||||||||||||||||||
Sbjct: 32 catttcttggattgaagggagctc 9
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 152 cattttttggattgaagggagctc 175
||||| ||||||||||||||||||
Sbjct: 179 catttcttggattgaagggagctc 202
>51338_pgl-miR159:pmrd
Length = 226
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 229 tttggattgaagggagctct 248
>48824_osa-miR159f:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 ttggattgaagggagctcta 177
||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctcta 178
>48820_osa-miR159b:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>48819_osa-miR159a:pmrd
Length = 272
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
>48796_oru-miR159:pmrd
Length = 274
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 tttggattgaagggagctct 176
||||||||||||||||||||
Sbjct: 242 tttggattgaagggagctct 261
