miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54541_sly-miR160a:pmrd
Length = 129
Score = 256 bits (129), Expect = 3e-69
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 caagtcgtgtacacgtatatgcctggctccctgtatgccatttgcaaagctcaccgtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caagtcgtgtacacgtatatgcctggctccctgtatgccatttgcaaagctcaccgtaat 60
Query: 61 atatcgatgggccttgttgaatggcgtatgaggagccaagcatattccgatatcgtgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atatcgatgggccttgttgaatggcgtatgaggagccaagcatattccgatatcgtgtat 120
Query: 121 atgatgttg 129
|||||||||
Sbjct: 121 atgatgttg 129
>54783_vvi-miR160f:pmrd
Length = 102
Score = 69.9 bits (35), Expect = 4e-13
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 16 tatatgcctggctccctgtatgccatttgcaaagctcaccgtaatatatcgatgggcctt 75
||||||||||||||||||||||||||||||| ||| ||||| | |||||| ||||||
Sbjct: 7 tatatgcctggctccctgtatgccatttgcagagcccaccg--gcacatcgat-ggcctt 63
Query: 76 gttgaatggcgtatgaggagccaagcatat 105
|| |||||||||||||||||| ||||||
Sbjct: 64 cgtggatggcgtatgaggagccatgcatat 93
>54781_vvi-miR160d:pmrd
Length = 102
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 19 atgcctggctccctgtatgccatttgcaaag 49
|||||||||||||||||||||||||||||||
Sbjct: 10 atgcctggctccctgtatgccatttgcaaag 40
>51610_ptc-miR160c:pmrd
Length = 98
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgcaaagctcaccg 56
||||||||||||||||||||||||||| ||| |||||
Sbjct: 11 tgcctggctccctgtatgccatttgcagagcccaccg 47
>48704_mtr-miR160e:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatattcc 108
||||||||||||||||||||||||||||
Sbjct: 64 atggcgtatgaggagccaagcatattcc 91
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gtatatgcctggctccctgtatgccat 41
|||| ||||||||||||||||||||||
Sbjct: 1 gtatgtgcctggctccctgtatgccat 27
>48702_mtr-miR160b:pmrd
Length = 91
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatattcc 108
||||||||||||||||||||||||||||
Sbjct: 64 atggcgtatgaggagccaagcatattcc 91
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gtatatgcctggctccctgtatgccat 41
|||| ||||||||||||||||||||||
Sbjct: 1 gtatgtgcctggctccctgtatgccat 27
>51609_ptc-miR160b:pmrd
Length = 98
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgca 46
|||||||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccatttgca 37
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatattc 107
|||||||||||||||||| ||||||||
Sbjct: 69 atggcgtatgaggagccatgcatattc 95
>48542_gma-miR160a:pmrd
Length = 119
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 15 gtatatgcctggctccctgtatgccatttgcaaagctca 53
|||| ||||||||||||||||||||||||| | ||||||
Sbjct: 16 gtatgtgcctggctccctgtatgccatttgtagagctca 54
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatatt 106
||||||||||||||||||||||||||
Sbjct: 79 atggcgtatgaggagccaagcatatt 104
>51615_ptc-miR160h:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgcaaagctca 53
|||||||||||||| |||||||||||| ||||||
Sbjct: 11 tgcctggctccctgcatgccatttgcatagctca 44
>46865_aqc-miR160b:pmrd
Length = 82
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgc 45
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccatttgc 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttg 44
|||||||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgccatttg 30
>48397_bra-miR160a:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 78 tgaatggcgtatgaggagccaagcatatt 106
||||||||||||||||||||| |||||||
Sbjct: 80 tgaatggcgtatgaggagccatgcatatt 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgccat 41
||||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgccat 47
>48396_bra-miR160a:pmrd
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 78 tgaatggcgtatgaggagccaagcatatt 106
||||||||||||||||||||| |||||||
Sbjct: 80 tgaatggcgtatgaggagccatgcatatt 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgccat 41
||||||||||||||||||||||||
Sbjct: 24 tatgcctggctccctgtatgccat 47
>54942_zma-miR160e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcca 40
||||||||||||||||||||||||
Sbjct: 6 atatgcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcca 40
||||||||||||||||||||||||
Sbjct: 18 atatgcctggctccctgtatgcca 41
>54675_tae-miR160:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcca 40
||||||||||||||||||||||||
Sbjct: 19 atatgcctggctccctgtatgcca 42
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcca 40
||||||||||||||||||||||||
Sbjct: 5 atatgcctggctccctgtatgcca 28
>48658_hvv-miR160a:pmrd
Length = 344
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcca 40
||||||||||||||||||||||||
Sbjct: 321 atatgcctggctccctgtatgcca 344
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgccat 41
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccat 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatat 105
|||||||||||||||||| ||||||
Sbjct: 61 atggcgtatgaggagccatgcatat 85
>46934_ath-miR160a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgccat 41
||||||||||||||||||||||||
Sbjct: 2 tatgcctggctccctgtatgccat 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 81 atggcgtatgaggagccaagcatat 105
|||||||||||||||||| ||||||
Sbjct: 61 atggcgtatgaggagccatgcatat 85
>54943_zma-miR160f:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcc 39
|||||||||||||||||||||||
Sbjct: 18 atatgcctggctccctgtatgcc 40
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgcca 40
|||||||||||||||||||||||
Sbjct: 10 tatgcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgcca 40
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgcca 40
|||||||||||||||||||||||
Sbjct: 9 tatgcctggctccctgtatgcca 31
>48830_osa-miR160e:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 atatgcctggctccctgtatgcc 39
|||||||||||||||||||||||
Sbjct: 8 atatgcctggctccctgtatgcc 30
>46936_ath-miR160c:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 tatgcctggctccctgtatgcca 40
|||||||||||||||||||||||
Sbjct: 3 tatgcctggctccctgtatgcca 25
>54946_zma-miR160i:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 atgcctggctccctgtatgcca 40
||||||||||||||||||||||
Sbjct: 1 atgcctggctccctgtatgcca 22
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccat 41
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgc 45
||||||||||||||||||||| ||||
Sbjct: 30 tgcctggctccctgtatgccacttgc 55
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54940_zma-miR160c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgcca 30
>54780_vvi-miR160c:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48828_osa-miR160c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>48635_gra-miR160b:pmrd
Length = 293
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 atgcctggctccctgtatgcc 39
|||||||||||||||||||||
Sbjct: 272 atgcctggctccctgtatgcc 292
>48634_gra-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 atgcctggctccctgtatgcc 39
|||||||||||||||||||||
Sbjct: 85 atgcctggctccctgtatgcc 105
>48306_bdi-miR160:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 atgcctggctccctgtatgcc 39
|||||||||||||||||||||
Sbjct: 17 atgcctggctccctgtatgcc 37
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcca 40
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>54760_ttu-miR160b:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54528_sce-miR160:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>51367_ppt-miR160i:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 gcctggctccctgtatgcca 40
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>51365_ppt-miR160g:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgccatttgcaaagct 51
||||||||||| |||||||||| ||| |||||
Sbjct: 30 tgcctggctccttgtatgccatctgcgaagct 61
>51360_ppt-miR160b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 gcctggctccctgtatgcca 40
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>48659_hvv-miR160b:pmrd
Length = 47
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 tgcctggctccctgtatgcc 39
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
