miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54542_sly-miR162:pmrd
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 caggaggcagcggtaccattgatccgttccctggaagctgaatatatatatacgcaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggaggcagcggtaccattgatccgttccctggaagctgaatatatatatacgcaacat 60
Query: 61 tacagcaaaaggaatcggtcgataaacctctgcatccag 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacagcaaaaggaatcggtcgataaacctctgcatccag 99
>54948_zma-miR162b:pmrd
Length = 130
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 71 ggaatcggtcgataaacctctgcatccag 99
|||||||||||||||||||||||||||||
Sbjct: 102 ggaatcggtcgataaacctctgcatccag 130
>54784_vvi-miR162:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
||||||||||||||||||||||||||||
Sbjct: 66 gaatcggtcgataaacctctgcatccag 93
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 72 gaatcggtcgataaacctctgcatcca 98
|||||||||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatcca 98
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>48834_osa-miR162a:pmrd
Length = 171
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 71 ggaatcggtcgataaacctctgcatccag 99
||||||| |||||||||||||||||||||
Sbjct: 135 ggaatcgatcgataaacctctgcatccag 163
>54387_rco-miR162:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccag 95
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
>48682_llu-miR162:pmrd
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccag 93
>48493_ghr-miR162a:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 87 gaatcgatcgataaacctctgcatccag 114
>48423_cpa-miR162a:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 73 gaatcgatcgataaacctctgcatccag 100
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccag 15
>46938_ath-miR162b:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggaatcggtcgataaacctctgcatccag 99
|||||||| ||||||| |||||||||||||
Sbjct: 85 aggaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 70 aggaatcggtcgataaacctctgcatccag 99
|||||||| ||||||| |||||||||||||
Sbjct: 95 aggaatcgatcgataagcctctgcatccag 124
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccag 8
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccag 8
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51616_ptc-miR162a:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>48685_lsa-miR162:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>48546_gma-miR162m:pmrd
Length = 367
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccag 21
>46937_ath-miR162a:pmrd
Length = 140
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccag 99
|||||||||||||||||||||
Sbjct: 89 tcgataaacctctgcatccag 109
