miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54554_sly-miR171d:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 atggaagaagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atggaagaagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaa 60
Query: 61 agaacgatctcagattgagccgcgccaatatcacttcttattttcattccgt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaacgatctcagattgagccgcgccaatatcacttcttattttcattccgt 112
>54832_vvi-miR171e:pmrd
Length = 103
Score = 91.7 bits (46), Expect = 1e-19
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||||
Sbjct: 8 aagcgatgttggtgaggttcaatccgaagacggatttacgaagagc--cgtaaagaacga 65
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||| ||||||||||||||||||||||||
Sbjct: 66 tctctgattgagccgcgccaatatcactt 94
>54833_vvi-miR171f:pmrd
Length = 103
Score = 75.8 bits (38), Expect = 6e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
|||||||||||||||||||||||| ||||| |||||||||| | ||||| | ||
Sbjct: 8 aagcgatgttggtgaggttcaatctgaagattgatttatgcttgaat--gtaaaaactga 65
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||
Sbjct: 66 tctcagattgagccgcgccaatatcactt 94
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 71.9 bits (36), Expect = 1e-13
Identities = 79/93 (84%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaattta----tgcttattttcgtaaaga 63
|||||||||||||||||||||||||||||||| ||||| || | | |||||
Sbjct: 4 aagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaat 63
Query: 64 acgatctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||||||
Sbjct: 64 acgatctcagattgagccgcgccaatatcactt 96
>51686_ptc-miR171c:pmrd
Length = 104
Score = 71.9 bits (36), Expect = 1e-13
Identities = 79/93 (84%), Gaps = 4/93 (4%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaattta----tgcttattttcgtaaaga 63
|||||||||||||||||||||||||||||||| ||||| || | | |||||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaat 66
Query: 64 acgatctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||||||
Sbjct: 67 acgatctcagattgagccgcgccaatatcactt 99
>48497_ghr-miR171:pmrd
Length = 85
Score = 69.9 bits (35), Expect = 4e-13
Identities = 74/85 (87%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 12 gatgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaagaacga 67
|||||||||||||||||||||||||||| ||||| | | ||| ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 68 tctcagattgagccgcgccaatatc 92
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
||||||||||||||||||||||||||||||| ||||| | | ||||| |||
Sbjct: 3 aagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccga 62
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||
Sbjct: 63 tctcagattgagccgcgccaatatcactt 91
>51687_ptc-miR171d:pmrd
Length = 100
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
||||||||||||||||||||||||||||||| ||||| | | ||||| |||
Sbjct: 7 aagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaatccga 66
Query: 68 tctcagattgagccgcgccaatatcactt 96
|||||||||||||||||||||||||||||
Sbjct: 67 tctcagattgagccgcgccaatatcactt 95
>51383_ppt-miR171b:pmrd
Length = 92
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 ctcagattgagccgcgccaatatcac 94
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>54461_sbi-miR171j:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcacttc 97
|||||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcacttc 108
>51382_ppt-miR171a:pmrd
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 tcagattgagccgcgccaatatcac 94
|||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85
>54582_smo-miR171d:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 tctcagattgagccgcgccaatatcac 94
||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91
>54553_sly-miR171c:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcac 94
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>48895_osa-miR171a:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatccga 34
|||||| |||||||||||||||||||
Sbjct: 7 agcgatattggtgaggttcaatccga 32
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatcacttc 97
|||||||||||||||||||| ||||
Sbjct: 68 gattgagccgcgccaatatctcttc 92
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatca 93
|||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatca 22
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatca 93
|||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatca 22
>55028_zma-miR171a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>55027_zma-miR170p:pmrd
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 43 gattgagccgcgccaatatc 62
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54579_smo-miR171a:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 agattgagccgcgccaatatcact 95
||||||||||| ||||||||||||
Sbjct: 102 agattgagccgtgccaatatcact 125
>54458_sbi-miR171g:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>54451_sbi-miR170:pmrd
Length = 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 36 gattgagccgcgccaatatc 55
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51342_ppd-miR170:pmrd
Length = 297
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 278 gattgagccgcgccaatatc 297
>48636_gra-miR171:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 186 gattgagccgcgccaatatc 205
>48407_bra-miR171e:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>48313_bdi-miR171d:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 82 gattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>46982_ath-miR171o:pmrd
Length = 339
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 320 gattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46980_ath-miR171m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>46976_ath-miR170n:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 153 gattgagccgcgccaatatc 172
>46975_ath-miR170m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>46853_ace-miR171c:pmrd
Length = 216
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 197 gattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatatc 215
>46851_ace-miR171a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46850_ace-miR170d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 196 gattgagccgcgccaatatc 215
>46849_ace-miR170c:pmrd
Length = 55
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 57 gattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 gattgagccgcgccaatatc 92
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
