miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54556_sly-miR172b:pmrd
Length = 135
Score = 268 bits (135), Expect = 1e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattcatacatgaaaattaagaggcaaggttaaatatgtagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtagcatcatcaagattcatacatgaaaattaagaggcaaggttaaatatgtagcttt 60
Query: 61 aatttgaaatgaaaaatataatatatcatgaccatgtctatttatttcaaagtgagaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttgaaatgaaaaatataatatatcatgaccatgtctatttatttcaaagtgagaatc 120
Query: 121 ttgatgatgctgcat 135
|||||||||||||||
Sbjct: 121 ttgatgatgctgcat 135
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 102 aagtgagaatcttgatgatgctgcat 127
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 109 aagtgagaatcttgatgatgctgcat 134
>51703_ptc-miR172f:pmrd
Length = 161
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 127 aagtgagaatcttgatgatgctgcat 152
>51699_ptc-miR172b:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 106 aagtgagaatcttgatgatgctgcat 131
>51344_ppd-miR172b:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 34 aagtgagaatcttgatgatgctgcat 9
>51343_ppd-miR172a:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 110 aagtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||||
Sbjct: 104 aagtgagaatcttgatgatgctgcat 129
>51700_ptc-miR172c:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 99 tatttatttcaaagtgagaatcttgatgatgctgcat 135
||||| ||| || ||||||||||||||||||||||||
Sbjct: 83 tatttctttgaaggtgagaatcttgatgatgctgcat 119
>52946_ptc-miRf11124-akr:pmrd
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 101 gtgagaatcttgatgatgctgcat 124
>51947_ptc-miRf10125-akr:pmrd
Length = 136
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 100 gtgagaatcttgatgatgctgcat 123
>51698_ptc-miR172a:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 97 gtgagaatcttgatgatgctgcat 120
>48571_gma-miR172b:pmrd
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 gtgagaatcttgatgatgctgcat 135
||||||||||||||||||||||||
Sbjct: 111 gtgagaatcttgatgatgctgcat 134
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 21 atgtagcatcatcaagattca 41
>55043_zma-miR172d:pmrd
Length = 74
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 52 tgagaatcttgatgatgctgcat 74
>55042_zma-miR172c:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 101 tgagaatcttgatgatgctgcat 123
>55041_zma-miR172b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 104 tgagaatcttgatgatgctgcat 126
>55040_zma-miR172a:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 61 tgagaatcttgatgatgctgcat 83
>54840_vvi-miR172d:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcat 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 28 gaatcttgatgatgctgcat 9
>54838_vvi-miR172b:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgcat 9
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 tgtagcatcatcaagattca 21
||||||||||||||||||||
Sbjct: 107 tgtagcatcatcaagattca 88
>54837_vvi-miR172a:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 31 tgagaatcttgatgatgctgcat 9
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 100 atgtagcatcatcaagattca 80
>54668_stu-miR172:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 71 tgagaatcttgatgatgctgcat 93
>54466_sbi-miR172d:pmrd
Length = 111
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 71 tgagaatcttgatgatgctgcat 93
>54465_sbi-miR172c:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcat 119
>54463_sbi-miR172a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>49516_osa-miRf10301-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>48909_osa-miR172d:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcat 111
>48906_osa-miR172a:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcat 99
>48693_mes-miR172:pmrd
Length = 146
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 114 tgagaatcttgatgatgctgcat 136
>48570_gma-miR172a:pmrd
Length = 159
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 118 tgagaatcttgatgatgctgcat 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 atgtagcatcatcaagattca 21
|||||||||||||||||||||
Sbjct: 21 atgtagcatcatcaagattca 41
>48410_bra-miR172b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>48409_bra-miR172b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>48408_bra-miR172a:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>48388_bol-miR172b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcat 102
>48387_bol-miR172a:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 85 tgagaatcttgatgatgctgcat 107
>47664_ath-miRf10564-akr:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 73 tgagaatcttgatgatgctgcat 95
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcat 111
>46985_ath-miR172b:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 69 tgagaatcttgatgatgctgcat 91
>46984_ath-miR172b:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 69 tgagaatcttgatgatgctgcat 91
>46983_ath-miR172a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 76 tgagaatcttgatgatgctgcat 98
>46882_aqc-miR172a:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgcat 135
|||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgcat 118
>54555_sly-miR172a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 gagaatcttgatgatgctgcat 135
||||||||||||||||||||||
Sbjct: 85 gagaatcttgatgatgctgcat 106
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgca 117
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 38 tgagaatcttgatgatgctgca 17
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 95 tgagaatcttgatgatgctgca 116
>46987_ath-miR172d:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 86 tgagaatcttgatgatgctgca 107
>46986_ath-miR172c:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 113 tgagaatcttgatgatgctgca 134
||||||||||||||||||||||
Sbjct: 96 tgagaatcttgatgatgctgca 117
>48637_gra-miR172a:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 agaatcttgatgatgctgcat 135
|||||||||||||||||||||
Sbjct: 1 agaatcttgatgatgctgcat 21
>47734_ath-miRf10634-akr:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 111 agtgagaatcttgatgatgctgcat 135
|||| ||||||||||||||||||||
Sbjct: 42 agtgggaatcttgatgatgctgcat 18
>46988_ath-miR172e:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 111 agtgagaatcttgatgatgctgcat 135
|||| ||||||||||||||||||||
Sbjct: 91 agtgggaatcttgatgatgctgcat 115
>55045_zma-miR172f:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 116 gaatcttgatgatgctgcat 135
>55044_zma-miR172e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 136 gaatcttgatgatgctgcat 155
>54464_sbi-miR172b:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 151 gaatcttgatgatgctgcat 170
>53739_ptc-miRf11917-akr:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 109 gaatcttgatgatgctgcat 128
>52835_ptc-miRf11013-akr:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 31 gaatcttgatgatgctgcat 12
>52315_ptc-miRf10493-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 108 gaatcttgatgatgctgcat 127
>51901_ptc-miRf10079-akr:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 29 gaatcttgatgatgctgcat 10
>51702_ptc-miR172e:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 105 gaatcttgatgatgctgcat 124
>51701_ptc-miR172d:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 154 gaatcttgatgatgctgcat 173
>48907_osa-miR172b:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 209 gaatcttgatgatgctgcat 228
>46883_aqc-miR172b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 116 gaatcttgatgatgctgcat 135
||||||||||||||||||||
Sbjct: 87 gaatcttgatgatgctgcat 106
