miRNEST 2.0, an integrative microRNA resource :: BLAST
>48573_gma-miR319b:pmrd
Length = 208
Score = 85.7 bits (43), Expect = 1e-17
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 94 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 153
|||||||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 115 ctcagcaaatgagtgaatgatgcgggag-acaaattgattcttaagtttcctgtacttgg 173
Query: 154 actgaagggagctcc 168
|||||||||||||||
Sbjct: 174 actgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 77.8 bits (39), Expect = 2e-15
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 94 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 153
||||||| ||||||||||| ||||||| |||| |||| |||| || |||||||||||||
Sbjct: 114 ctcagcagatgagtgaatgatgcgggag-acaaattgaatcttaagtttcctgtacttgg 172
Query: 154 actgaagggagctcc 168
|||||||||||||||
Sbjct: 173 actgaagggagctcc 187
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatccaaatgttgag 72
||||||| |||||||||||||||||||||||||||||
Sbjct: 59 ttcaattagctgccgactcattcatccaaatgttgag 95
>51707_ptc-miR319a:pmrd
Length = 188
Score = 75.8 bits (38), Expect = 9e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 103 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 162
||||||||||| ||||||| |||| |||| || | |||||||||||||||||||||||||
Sbjct: 114 tgagtgaatgatgcgggag-acaaattgaatcctaagcttcctgtacttggactgaaggg 172
Query: 163 agctcc 168
||||||
Sbjct: 173 agctcc 178
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 aatttgctgccgactcattcatccaaat 66
|||| |||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcatccaaat 79
>46884_aqc-miR319:pmrd
Length = 177
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatcca 63
||||||||||||||||||||||||||||
Sbjct: 40 ttcaatttgctgccgactcattcatcca 67
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 139 gcttcctgtacttggactgaagggagctcc 168
||||| ||||||||||||||||||||||||
Sbjct: 144 gcttcttgtacttggactgaagggagctcc 173
>54844_vvi-miR319c:pmrd
Length = 182
Score = 52.0 bits (26), Expect = 1e-07
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 107 tgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaagggagct 166
||||||| ||||||| |||| ||| |||| |||| ||||| ||||||||||||||||||
Sbjct: 109 tgaatgatgcgggag-acaaattggatcttaagctccctgtgcttggactgaagggagct 167
Query: 167 cc 168
||
Sbjct: 168 cc 169
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 39 aatttgctgccgactcattcatccaaat 66
|||| |||||||||||||||||||||||
Sbjct: 52 aattagctgccgactcattcatccaaat 79
>54391_rin-miR159:pmrd
Length = 192
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatccaaat 66
||||||| ||| |||||||||||||||||||
Sbjct: 49 ttcaattagcttccgactcattcatccaaat 79
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 36 ttcaatttgctgccgactcattcatccaaat 66
||||||| ||| |||||||||||||||||||
Sbjct: 149 ttcaattagcttccgactcattcatccaaat 119
>46992_ath-miR319a:pmrd
Length = 176
Score = 46.1 bits (23), Expect = 8e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 36 ttcaatttgctgccgactcattcatccaaat 66
||||||| ||| |||||||||||||||||||
Sbjct: 42 ttcaattagcttccgactcattcatccaaat 72
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctcc 180
>54754_tar-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>54670_svi-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>51713_ptc-miR319g:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 33 gggttcaatttgctgccgactcattcat 60
||||| |||| |||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattcat 76
>51710_ptc-miR319d:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 162 ctgtgcttggactgaagggagctcc 186
>51351_ppl-miR319:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctcc 168
|||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48415_bvl-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46860_ape-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 caatttgctgccgactcattcatccaaat 66
||||| ||| |||||||||||||||||||
Sbjct: 50 caattagcttccgactcattcatccaaat 78
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 144 ctgtacttggactgaagggagctc 167
|||| |||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctc 170
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 149 cttggactgaagggagctcc 168
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
