miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54560_sly-miR397:pmrd
Length = 116
Score = 230 bits (116), Expect = 2e-61
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 1 cagagtacttagaaacatgattgagtgcagcgttgatgacatatttgagaagtcctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagagtacttagaaacatgattgagtgcagcgttgatgacatatttgagaagtcctgcat 60
Query: 61 ttgggccttcctcatttttcatcaacgctaaactcgatcatgtttttaattctctg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgggccttcctcatttttcatcaacgctaaactcgatcatgtttttaattctctg 116
>54873_vvi-miR397b:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatga 39
|||||| ||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatga 32
>54872_vvi-miR397a:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 aaacatgattgagtgcagcgttgatga 39
|||||| ||||||||||||||||||||
Sbjct: 6 aaacatcattgagtgcagcgttgatga 32
>51741_ptc-miR397a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 agaaacatgattgagtgcagcgttgatga 39
|||| ||| ||||||||||||||||||||
Sbjct: 4 agaaccatcattgagtgcagcgttgatga 32
>48376_bna-miR397b:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>48375_bna-miR397a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 2 aacatcattgagtgcagcgttgatg 26
>47010_ath-miR397a:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 14 aacatgattgagtgcagcgttgatg 38
||||| |||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>54748_tae-miR2029:pmrd
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 1 attgagtgcagcgttgatga 20
>51742_ptc-miR397b:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>48961_osa-miR397b:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>48960_osa-miR397b:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>48959_osa-miR397a:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>48958_osa-miR397a:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>48334_bdi-miR2508:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 12 attgagtgcagcgttgatga 31
>48315_bdi-miR397:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 20 attgagtgcagcgttgatga 39
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
