miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54770_vvi-miR156e:pmrd
Length = 108
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 1 gtatggtaggtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtatggtaggtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttcta 60
Query: 61 tgcttgaagctctgtgtgcttactccctatctgtcacccctcaagcat 108
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcttgaagctctgtgtgcttactccctatctgtcacccctcaagcat 108
>46915_ath-miR156f:pmrd
Length = 132
Score = 69.9 bits (35), Expect = 4e-13
Identities = 81/96 (84%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcat----gaagtttctatgct 64
||||||||| |||||||||||| |||||| |||||||||| |||| ||| |||||
Sbjct: 19 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 78
Query: 65 tgaagctctgtgtgcttactccctatctgtcacccc 100
||||||| |||||||| |||| ||||| ||||||||
Sbjct: 79 tgaagctatgtgtgctcactctctatccgtcacccc 114
>47357_ath-miRf10257-akr:pmrd
Length = 94
Score = 65.9 bits (33), Expect = 6e-12
Identities = 79/94 (84%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcat----gaagtttctatgct 64
||||||||| |||||||||||| |||||| |||||||||| |||| ||| |||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 60
Query: 65 tgaagctctgtgtgcttactccctatctgtcacc 98
||||||| |||||||| |||| ||||| ||||||
Sbjct: 61 tgaagctatgtgtgctcactctctatccgtcacc 94
>47356_ath-miRf10256-akr:pmrd
Length = 94
Score = 65.9 bits (33), Expect = 6e-12
Identities = 79/94 (84%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcat----gaagtttctatgct 64
||||||||| |||||||||||| |||||| |||||||||| |||| ||| |||||
Sbjct: 1 ggtgacagaagagagtgagcacacatggtggctttcttgcatatttgaaggttccatgct 60
Query: 65 tgaagctctgtgtgcttactccctatctgtcacc 98
||||||| |||||||| |||| ||||| ||||||
Sbjct: 61 tgaagctatgtgtgctcactctctatccgtcacc 94
>54768_vvi-miR156c:pmrd
Length = 104
Score = 63.9 bits (32), Expect = 2e-11
Identities = 77/90 (85%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 7 taggtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttg 66
||||||||||| |||||||||||| ||||| ||| ||||||||| | || |||||||
Sbjct: 7 taggtgacagaagagagtgagcacacatgg-tctgttcttgcat---gggtccatgcttg 62
Query: 67 aagctctgtgtgcttactccctatctgtca 96
|||||||| ||||| |||| ||||||||||
Sbjct: 63 aagctctgcgtgctcactctctatctgtca 92
>46914_ath-miR156e:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 60 atgcttgaagctctgtgtgcttactccctatctgtcacccct 101
|||||||||||| ||||||||||||| || ||||||||||||
Sbjct: 66 atgcttgaagctatgtgtgcttactctctctctgtcacccct 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 aggtgacagaggagagtgagcactcatggt 37
|||||||||| |||||||||||| ||||||
Sbjct: 4 aggtgacagaagagagtgagcacacatggt 33
>51354_ppr-miR156:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatg 51
||||||| |||||||||||| |||||| |||||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgcttttcttgcatg 42
>54924_zma-miR156o:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatga 52
||||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgcctttcttgcatga 42
>54913_zma-miR156c:pmrd
Length = 139
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatga 52
||||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 21 tgacagaagagagtgagcacacatggtgcctttcttgcatga 62
>54395_sbi-miR156c:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatga 52
||||||| |||||||||||| |||||| | ||||||||||||
Sbjct: 1 tgacagaagagagtgagcacacatggtgcctttcttgcatga 42
>51592_ptc-miR156b:pmrd
Length = 101
Score = 52.0 bits (26), Expect = 8e-08
Identities = 78/93 (83%), Gaps = 3/93 (3%)
Strand = Plus / Plus
Query: 8 aggtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttga 67
|||||||||| |||||||||||| || ||| | |||||||||||| || ||||||||
Sbjct: 8 aggtgacagaagagagtgagcacacagggtac-tttcttgcatga--catccatgcttga 64
Query: 68 agctctgtgtgcttactccctatctgtcacccc 100
| || || ||||| |||| ||||||||||||||
Sbjct: 65 aactttgcgtgctcactctctatctgtcacccc 97
>48248_ath-miRf11148-akr:pmrd
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 60 atgcttgaagctctgtgtgcttactccctatctgtca 96
|||||||||||| ||||||||||||| || |||||||
Sbjct: 37 atgcttgaagctatgtgtgcttactctctctctgtca 1
>53789_ptc-miRf11967-akr:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaa 68
||||||||| |||||||||||| || ||| | |||||||||||| || |||||||||
Sbjct: 1 ggtgacagaagagagtgagcacacagggtac-tttcttgcatga--catccatgcttgaa 57
Query: 69 gctctgtgtgcttactccctatctgtcacc 98
|| || ||||| |||| ||||||||||||
Sbjct: 58 actttgcgtgctcactctctatctgtcacc 87
>52469_ptc-miRf10647-akr:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Minus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaagc 70
||||||| |||||||||||| || ||| |||| ||||||||| ||| |||||||||||
Sbjct: 93 tgacagaagagagtgagcacacagggtacttt-cttgcatgacgttc--atgcttgaagc 37
Query: 71 tctgtgtgcttactccctatctgtcacccc 100
| || |||| || | ||||||||||||||
Sbjct: 36 tttgcgtgcccaccctctatctgtcacccc 7
>51594_ptc-miR156d:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatgaagtttctatgcttgaagc 70
||||||| |||||||||||| || ||| |||| ||||||||| ||| |||||||||||
Sbjct: 11 tgacagaagagagtgagcacacagggtacttt-cttgcatgacgttc--atgcttgaagc 67
Query: 71 tctgtgtgcttactccctatctgtcacccc 100
| || |||| || | ||||||||||||||
Sbjct: 68 tttgcgtgcccaccctctatctgtcacccc 97
>54927_zma-miR156r:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatga 52
||||||| ||||||| |||| |||||| | ||||||||||||
Sbjct: 1 tgacagaagagagtgggcacacatggtgcctttcttgcatga 42
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcat 50
||||||||| |||||||||||| | ||||| ||| |||||||
Sbjct: 5 ggtgacagaagagagtgagcacacgtggttgtttccttgcat 46
>48801_osa-miR156a:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 9 ggtgacagaggagagtgagcactcatggttcttttcttgcat 50
||||||||| |||||||||||| | ||||| ||| |||||||
Sbjct: 5 ggtgacagaagagagtgagcacacgtggttgtttccttgcat 46
>48803_osa-miR156c:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatg 51
||||||| |||||||||||| |||||| |||||||||||
Sbjct: 29 tgacagaagagagtgagcacacatggtgactttcttgcatg 69
>48795_oru-miR156:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 11 tgacagaggagagtgagcactcatggttcttttcttgcatg 51
||||||| |||||||||||| |||||| |||||||||||
Sbjct: 2 tgacagaagagagtgagcacacatggtgactttcttgcatg 42
>48489_ghr-miR156b:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 60 atgcttgaagctctgtgtgcttactccctatctgtca 96
||||||||||||||| ||||| || | ||||||||||
Sbjct: 55 atgcttgaagctctgcgtgctcaccctctatctgtca 91
>48488_ghr-miR156a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 60 atgcttgaagctctgtgtgcttactccctatctgtca 96
||||||||||||||| ||||| || | ||||||||||
Sbjct: 61 atgcttgaagctctgcgtgctcaccctctatctgtca 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 8 aggtgacagaggagagtgagcactcatggttcttttcttgcatg 51
|||||||||| |||||||||||| || ||| | |||||||||||
Sbjct: 6 aggtgacagaagagagtgagcacacagggtac-tttcttgcatg 48
>46916_ath-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 12 gacagaggagagtgagcactcatggttctttt 43
|||||| |||||||||||| ||||| ||||||
Sbjct: 12 gacagaagagagtgagcacacatggctctttt 43
