miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54773_vvi-miR156h:pmrd
Length = 228
Score = 452 bits (228), Expect = e-128
Identities = 228/228 (100%)
Strand = Plus / Plus
Query: 1 tgcctcacaatgacagaagagagagagcatgctggtgggaaaacaattacaacttttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctcacaatgacagaagagagagagcatgctggtgggaaaacaattacaacttttgat 60
Query: 61 catctgatctggaaatgcttgtaagcggcattctcttggattgtaatctgaattctgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 catctgatctggaaatgcttgtaagcggcattctcttggattgtaatctgaattctgcct 120
Query: 121 ctatcatcaacctgcccacaaacgatttccttcaactgagtgcctttccggcttgagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatcatcaacctgcccacaaacgatttccttcaactgagtgcctttccggcttgagcct 180
Query: 181 tctgcatgatcagctgagttctttctgcgcctttcattgtgtcctgcc 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctgcatgatcagctgagttctttctgcgcctttcattgtgtcctgcc 228
>54920_zma-miR156j:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 20 atgacagaagagagagagca 39
>54672_tae-miR156b:pmrd
Length = 416
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgacagaagagagagagcatgctg 34
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagagagcacgctg 24
>54671_tae-miR156a:pmrd
Length = 52
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgacagaagagagagagcatgctg 34
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagagagcacgctg 24
>54657_stu-miR156b:pmrd
Length = 382
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 362 atgacagaagagagagagca 381
>54626_sof-miR156h:pmrd
Length = 343
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 323 atgacagaagagagagagca 342
>54396_sbi-miR156d:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 20 atgacagaagagagagagca 39
>51340_ppd-miR156:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 126 atgacagaagagagagagca 145
>48818_osa-miR156r:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 tgacagaagagagagagcatgctg 34
||||||||||||||||||| ||||
Sbjct: 1 tgacagaagagagagagcacgctg 24
>48811_osa-miR156k:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 10 atgacagaagagagagagca 29
>48535_gma-miR156h:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 127 atgacagaagagagagagca 146
>48534_gma-miR156g:pmrd
Length = 209
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 189 atgacagaagagagagagca 208
>48492_ghr-miR157:pmrd
Length = 152
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 1 atgacagaagagagagagca 20
>48472_csi-miR156b:pmrd
Length = 515
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 495 atgacagaagagagagagca 514
>48470_cru-miR156:pmrd
Length = 67
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 47 atgacagaagagagagagca 66
>48426_cpt-miR156b:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 10 atgacagaagagagagagca 29
>46919_ath-miR156o:pmrd
Length = 245
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 atgacagaagagagagagca 29
||||||||||||||||||||
Sbjct: 225 atgacagaagagagagagca 244
