miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54775_vvi-miR159a:pmrd
Length = 194
Score = 385 bits (194), Expect = e-108
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 1 gggtttatgggagctcctttacgctccagttctgaaaggagatgatggtatccacagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtttatgggagctcctttacgctccagttctgaaaggagatgatggtatccacagctg 60
Query: 61 ctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaactatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaactatgg 120
Query: 121 gtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaagggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaagggagc 180
Query: 181 tctcataacccttc 194
||||||||||||||
Sbjct: 181 tctcataacccttc 194
>54776_vvi-miR159b:pmrd
Length = 185
Score = 107 bits (54), Expect = 3e-24
Identities = 115/134 (85%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 58 ctgctggttcatgagtacctatggctgcacaatatatatagcaatgttgtgtgcaaacta 117
|||||||||||||| ||||||||||||| | |||| | ||| |||| | |||||||
Sbjct: 48 ctgctggttcatgaaaacctatggctgcattctctatactgaaattttgtatacaaacta 107
Query: 118 tgggtgtgcatgacctcggagaagtggttgccttgatcttt-ctggccttggagtgaagg 176
||||| ||||||| || ||||||||| |||| || |||||| ||||||||||||||||||
Sbjct: 108 tgggtttgcatgaacttggagaagtgtttgcttttatcttttctggccttggagtgaagg 167
Query: 177 gagctctcataacc 190
||||||||||||||
Sbjct: 168 gagctctcataacc 181
>51606_ptc-miR159e:pmrd
Length = 192
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 135 ggagaagtggttgccttgatctttctggccttggagtgaagggagctc 182
||||| |||||||||||||||||| ||| ||||| |||||||||||||
Sbjct: 134 ggagatgtggttgccttgatctttttggtcttggggtgaagggagctc 181
>51607_ptc-miR159f:pmrd
Length = 201
Score = 40.1 bits (20), Expect = 6e-04
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
|||| |||||||||| ||||| |||||| || ||| | || | | ||||||||||||||
Sbjct: 128 gggtctgcatgacctaggagacgtggttaccctgaccctttttgtattggagtgaaggga 187
Query: 179 gctc 182
||||
Sbjct: 188 gctc 191
>48540_gma-miR159b:pmrd
Length = 186
Score = 40.1 bits (20), Expect = 6e-04
Identities = 54/64 (84%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 119 gggtgtgcatgacctcggagaagtggttgccttgatctttctggccttggagtgaaggga 178
|||| |||||| ||| ||||| | | || ||||||||||| ||| ||||||||||||||
Sbjct: 112 gggtttgcatgccctgggagatgagtttaccttgatcttt-tggtattggagtgaaggga 170
Query: 179 gctc 182
||||
Sbjct: 171 gctc 174
