miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54777_vvi-miR159c:pmrd
Length = 190
Score = 377 bits (190), Expect = e-105
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 1 ttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 60
Query: 61 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggcttg 120
Query: 121 catatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctcta 180
Query: 181 cacctctctc 190
||||||||||
Sbjct: 181 cacctctctc 190
>51603_ptc-miR159b:pmrd
Length = 187
Score = 105 bits (53), Expect = 1e-23
Identities = 153/184 (83%), Gaps = 8/184 (4%)
Strand = Plus / Plus
Query: 4 tggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgact 63
||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||
Sbjct: 6 tggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagc 65
Query: 64 tatggatcccacagccctatc-ccgtcaatggggggca-ttggataggcttgtggcttgc 121
|||| |||||||||||||||| || ||| | || || ||| ||| || |||||||
Sbjct: 66 tatgaatcccacagccctatcaccatca------gtcattttgatgggcctgcggcttgc 119
Query: 122 atatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctctac 181
|||||||||||||| |||| | || ||||||| || |||||||||||||||||||||
Sbjct: 120 atatctcaggagctttattacctaatgttagatctttttttggattgaagggagctctaa 179
Query: 182 acct 185
||||
Sbjct: 180 acct 183
>54378_pvu-miR159:pmrd
Length = 174
Score = 91.7 bits (46), Expect = 2e-19
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 8 gtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatg 67
|||||||||||||||||||||| |||| ||||||||||| |||||||||||| | ||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 68 gatcccacag 77
||||||||||
Sbjct: 61 gatcccacag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 153 atccttgtttggattgaagggagctctac 181
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 91.7 bits (46), Expect = 2e-19
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 8 gtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatg 67
|||||||||||||||||||||| |||| ||||||||||| |||||||||||| | ||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 68 gatcccacag 77
||||||||||
Sbjct: 61 gatcccacag 70
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 153 atccttgtttggattgaagggagctctac 181
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 87.7 bits (44), Expect = 3e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 2 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 61
Query: 65 atggatcc 72
||||||||
Sbjct: 62 atggatcc 69
>51604_ptc-miR159c:pmrd
Length = 183
Score = 87.7 bits (44), Expect = 3e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 65 atggatcc 72
||||||||
Sbjct: 67 atggatcc 74
>51602_ptc-miR159a:pmrd
Length = 183
Score = 87.7 bits (44), Expect = 3e-18
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 5 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 65 atggatcc 72
||||||||
Sbjct: 67 atggatcc 74
>48539_gma-miR159a:pmrd
Length = 214
Score = 85.7 bits (43), Expect = 1e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 7 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 66
||||||||||||||||||||||| |||| ||||||||||| ||||||||||| | |||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78
Query: 67 ggatcccacag 77
|||||||||||
Sbjct: 79 ggatcccacag 89
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 155 ccttgtttggattgaagggagctctacacc 184
|||| |||||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctacacc 199
>48824_osa-miR159f:pmrd
Length = 188
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctctacacctctctc 190
||||||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>54540_sly-miR159:pmrd
Length = 177
Score = 56.0 bits (28), Expect = 1e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 9 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 68
|||||||||||||||||||| | | ||| || || || |||||||||||||| |||||
Sbjct: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
Query: 69 atcccacagccctatc 84
|| || ||||||||||
Sbjct: 61 attcctcagccctatc 76
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctcta 180
|||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctcta 177
>48686_ltu-miR159:pmrd
Length = 345
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctctacacc 184
|||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctacacc 25
>48701_mtr-miR159c:pmrd
Length = 44
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctctaca 182
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>48395_bra-miR159a:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctctaca 182
|||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctctaca 182
|||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183
>54931_zma-miR159b:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgtttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 180 tgtttggattgaagggagctct 201
>54673_tae-miR159a:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgtttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>48821_osa-miR159c:pmrd
Length = 197
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctctacacctctctc 190
|||||||||||||||||| ||| |||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
>48728_mtr-miR319b:pmrd
Length = 42
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 ttggattgaagggagctctaca 182
||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctaca 22
>48657_hvv-miR159b:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tgtttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tttggattgaagggagctctac 181
||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctac 184
