miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54778_vvi-miR160a:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ggggttgatctgcctggctccctgaatgccatctaagaagcttgtcaaggttgttgactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggttgatctgcctggctccctgaatgccatctaagaagcttgtcaaggttgttgactc 60
Query: 61 tcttcctagttggcatcagaggagtcatgcaggccccaacatt 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttcctagttggcatcagaggagtcatgcaggccccaacatt 103
>46864_aqc-miR160a:pmrd
Length = 83
Score = 99.6 bits (50), Expect = 4e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaagaagcttgtcaaggttgttgactctcttcctagt 70
|||||||||||||| |||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagcttgtcaagaatgttgacaccctttctagt 60
Query: 71 tggcatcagaggagtcatgcag 92
||||||||| ||||||| ||||
Sbjct: 61 tggcatcaggggagtcacgcag 82
>54782_vvi-miR160e:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 1e-15
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaagaagcttg-tcaaggttgttgactctcttcct 67
|||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 68
Query: 68 agttggcatcagaggagtcatgcaggc 94
| ||||||| || ||||||| ||||||
Sbjct: 69 atttggcatgaggggagtcaagcaggc 95
>54779_vvi-miR160b:pmrd
Length = 104
Score = 77.8 bits (39), Expect = 1e-15
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaagaagcttg-tcaaggttgttgactctcttcct 67
|||||||||||||||||||||||||||||||||||| | ||| ||||||| ||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 68
Query: 68 agttggcatcagaggagtcatgcaggc 94
| ||||||| || ||||||| ||||||
Sbjct: 69 atttggcatgaggggagtcaagcaggc 95
>51614_ptc-miR160g:pmrd
Length = 98
Score = 71.9 bits (36), Expect = 9e-14
Identities = 76/87 (87%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 8 atctgcctggctccctgaatgccatctaagaagcttgtcaag-gttgttgactctcttcc 66
||||||||||||||||| |||||| ||||||| ||||| || | | |||| ||||||
Sbjct: 8 atctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttga--ctcttca 65
Query: 67 tagttggcatcagaggagtcatgcagg 93
|||||||||||||||||||||||||||
Sbjct: 66 tagttggcatcagaggagtcatgcagg 92
>51613_ptc-miR160f:pmrd
Length = 100
Score = 71.9 bits (36), Expect = 9e-14
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatctaagaagcttgtcaa 48
||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9 tctgcctggctccctgaatgccatctaggaagcttgtcaa 48
>51612_ptc-miR160e:pmrd
Length = 100
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaagaagcttgtcaa 48
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatctaggaagcttgtcaa 48
>53071_ptc-miRf11249-akr:pmrd
Length = 82
Score = 65.9 bits (33), Expect = 5e-12
Identities = 73/84 (86%), Gaps = 3/84 (3%)
Strand = Plus / Minus
Query: 10 ctgcctggctccctgaatgccatctaagaagcttgtcaag-gttgttgactctcttccta 68
||||||||||||||| |||||| ||||||| ||||| || | | |||| |||||| ||
Sbjct: 82 ctgcctggctccctggatgccaactaagaaatttgtcgagtggtcttga--ctcttcata 25
Query: 69 gttggcatcagaggagtcatgcag 92
||||||||||||||||||||||||
Sbjct: 24 gttggcatcagaggagtcatgcag 1
>48831_osa-miR160f:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatc 33
||||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgaatgccatc 33
>54409_sbi-miR160f:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatc 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatc 23
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tctgcctggctccctgaatgccatct 34
|||||||||||||||| |||||||||
Sbjct: 9 tctgcctggctccctgtatgccatct 34
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgaatgccatc 33
||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatc 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 ctgcctggctccctgaatgccatctaagaagc 41
||||||||||||||| |||||| || ||||||
Sbjct: 12 ctgcctggctccctgtatgccacctgagaagc 43
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaagaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgaatgccatctaagaagct 42
|||||||||||||| ||||||| || ||||||
Sbjct: 6 tgcctggctccctgtatgccatatatgaagct 37
