miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54780_vvi-miR160c:pmrd
Length = 106
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 1 aaatgggttgtgcctggctccctgtatgccacacgtagagaccactccctttcccggatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatgggttgtgcctggctccctgtatgccacacgtagagaccactccctttcccggatt 60
Query: 61 ggctatttgcgggtggcgtgcgaggagccaagcatacccaccattc 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctatttgcgggtggcgtgcgaggagccaagcatacccaccattc 106
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 aaatgggttgtgcctggctccctgtatgccaca 33
||||||||| |||||||||||||||||||||||
Sbjct: 2 aaatgggttatgcctggctccctgtatgccaca 34
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcatac 97
||||||||||||||||||||||||||
Sbjct: 74 ggtggcgtgcgaggagccaagcatac 99
>51611_ptc-miR160d:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 aaatgggttgtgcctggctccctgtatgccaca 33
||||||||| |||||||||||||||||||||||
Sbjct: 1 aaatgggttatgcctggctccctgtatgccaca 33
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 72 ggtggcgtgcgaggagccaagcatac 97
||||||||||||||||||||||||||
Sbjct: 73 ggtggcgtgcgaggagccaagcatac 98
>48791_oba-miR160:pmrd
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 69 gcgggtggcgtgcgaggagccaagcatac 97
|||||||||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagcatac 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 ttgtgcctggctccctgtatgccac 32
|||||||||||||||||||||||||
Sbjct: 1 ttgtgcctggctccctgtatgccac 25
>51608_ptc-miR160a:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 81/96 (84%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 atgggttgtgcctggctccctgtatgccacacgtagagaccactccctt-tcccggattg 61
||||||| ||||||||||||||||||||||| | | |||||| || || | |||||
Sbjct: 3 atgggttatgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattg 62
Query: 62 gctatttgcgggtggcgtgcgaggagccaagcatac 97
||| |||| ||||||||||||||||||||||||||
Sbjct: 63 gct-gttgccggtggcgtgcgaggagccaagcatac 97
>54939_zma-miR160b:pmrd
Length = 121
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgccacac 44
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagcat 95
||||||||||| |||||||||||||
Sbjct: 78 gggtggcgtgcaaggagccaagcat 102
>48826_osa-miR160a:pmrd
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagcat 95
||||||||||| |||||||||||||
Sbjct: 62 gggtggcgtgcaaggagccaagcat 86
>54938_zma-miR160a:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccacac 34
|||||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgccacac 33
>54947_zma-miR160m:pmrd
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacac 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacac 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagca 94
||||||||||| ||||||||||||
Sbjct: 58 gggtggcgtgcaaggagccaagca 81
>54945_zma-miR160h:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacac 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacac 24
>54944_zma-miR160g:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacac 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacac 24
>54940_zma-miR160c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 5 tgtgcctggctccctgtatgccac 28
>54405_sbi-miR160b:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacac 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacac 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagca 94
||||||||||| ||||||||||||
Sbjct: 59 gggtggcgtgcaaggagccaagca 82
>54404_sbi-miR160a:pmrd
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacac 34
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacac 24
>48833_osa-miR160n:pmrd
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagcat 95
||||| ||||||||||||||||||||||
Sbjct: 104 tgcggatggcgtgcgaggagccaagcat 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48829_osa-miR160d:pmrd
Length = 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagcat 95
||||| ||||||||||||||||||||||
Sbjct: 111 tgcggatggcgtgcgaggagccaagcat 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgccac 29
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 5 tgtgcctggctccctgtatgccac 28
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccaca 27
>46935_ath-miR160b:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgccaca 27
>54675_tae-miR160:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 aatgggttgtgcctggctccctgtatgccac 32
|||||| | ||||||||||||||||||||||
Sbjct: 13 aatgggatatgcctggctccctgtatgccac 43
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gcgggtggcgtgcgaggagccaagcat 95
|||| ||||||||||||||||||||||
Sbjct: 86 gcggatggcgtgcgaggagccaagcat 112
>54407_sbi-miR160d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagca 94
||||| |||||||||||||||||||||
Sbjct: 74 tgcggatggcgtgcgaggagccaagca 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51610_ptc-miR160c:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgcca 31
>51334_pga-miR160:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>48827_osa-miR160b:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccac 32
|||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgccac 51
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagcat 95
||||||||||| |||||||||||||
Sbjct: 88 gggtggcgtgcaaggagccaagcat 112
>48704_mtr-miR160e:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgcca 26
>48542_gma-miR160a:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41
>54946_zma-miR160i:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccac 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagcat 95
||||| |||||||||||| |||||||||
Sbjct: 54 tgcggctggcgtgcgaggtgccaagcat 81
>54942_zma-miR160e:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccac 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagcat 95
||||| |||||||||||| |||||||||
Sbjct: 60 tgcggctggcgtgcgaggtgccaagcat 87
>54941_zma-miR160d:pmrd
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 68 tgcgggtggcgtgcgaggagccaagcat 95
||||| ||||||||| ||||||||||||
Sbjct: 97 tgcggatggcgtgcgtggagccaagcat 124
>54759_ttu-miR160a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54408_sbi-miR160e:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54406_sbi-miR160c:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>48832_osa-miR160m:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 gggtggcgtgcgaggagccaagca 94
||||||||||| ||||||||||||
Sbjct: 59 gggtggcgtgcaaggagccaagca 82
>48658_hvv-miR160a:pmrd
Length = 344
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 aatgggttgtgcctggctccctgtatgcca 31
|||||| | |||||||||||||||||||||
Sbjct: 315 aatgggatatgcctggctccctgtatgcca 344
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccac 32
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
