miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54784_vvi-miR162:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgttgtgaaaaaagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgttgtgaaaaaagcag 60
Query: 61 atcaagaatcggtcgataaacctctgcatccagcgttcactcc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaagaatcggtcgataaacctctgcatccagcgttcactcc 103
>48423_cpa-miR162a:pmrd
Length = 109
Score = 93.7 bits (47), Expect = 2e-20
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 3 aagtcactggatgcagcggttcatcgatctcttcct--gaaattgttgtgaaaaa-agca 59
||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||| ||
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcaca 66
Query: 60 gatcaagaatcggtcgataaacctctgcatccagcgtt 97
|| || |||||| |||||||||||||||||||||||||
Sbjct: 67 gaacatgaatcgatcgataaacctctgcatccagcgtt 104
>48545_gma-miR162a:pmrd
Length = 102
Score = 85.7 bits (43), Expect = 6e-18
Identities = 91/103 (88%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 1 tgaagtcactggatgcagcggttcatcgatctcttcctgaaattgttgtgaaaaaagcag 60
||||||||||||||||||||||||||||||||||||||| ||| ||||| || | |||
Sbjct: 2 tgaagtcactggatgcagcggttcatcgatctcttcctg-aatcgttgt-ttaacatcag 59
Query: 61 -atcaagaatcggtcgataaacctctgcatccagcgttcactc 102
| || |||||| ||||||||||||||||||||||| ||||||
Sbjct: 60 aaccatgaatcgatcgataaacctctgcatccagcgctcactc 102
>48493_ghr-miR162a:pmrd
Length = 148
Score = 61.9 bits (31), Expect = 8e-11
Identities = 80/95 (84%), Gaps = 6/95 (6%)
Strand = Plus / Plus
Query: 7 cactggatgcagcggttcatcgatctcttcctgaaa---ttgttgtgaaaaaagcaga-- 61
||||||| |||||||||||||||||||||||||| | ||||||||| || | || |
Sbjct: 22 cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 81
Query: 62 -tcaagaatcggtcgataaacctctgcatccagcg 95
|| |||||| |||||||||||||||||||||||
Sbjct: 82 tacatgaatcgatcgataaacctctgcatccagcg 116
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctg 39
|||| ||||||| |||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccagcg 95
|||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcg 6
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctg 39
|||| ||||||| |||||||||||||||||||||||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctg 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccagcg 95
|||||||||||||||||||||||
Sbjct: 28 tcgataaacctctgcatccagcg 6
>51616_ptc-miR162a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctg 39
|||| ||||||| |||||||||||||||||||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctg 41
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcg 95
|||||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccagcg 100
>54387_rco-miR162:pmrd
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 cactggatgcagcggttcatcgatctcttcctg 39
||||||| |||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>48707_mtr-miR162d:pmrd
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 ctggatgcagcggttcatcgatctcttcctgaa 41
|||||||||||||||||||||||| ||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaa 33
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 9 ctggatgcagcggttcatcgatctcttcctgaa 41
|||||||||||||||||||||||| ||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaa 54
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 66 gaatcggtcgataaacctctgcatcca 92
|||||||||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 63 caagaatcggtcgataaacctctgcatccagcg 95
||||||||| |||||||||||||||||||||||
Sbjct: 45 caagaatcgatcgataaacctctgcatccagcg 13
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 tgaagtcactggatgcagcggttcatcgatc 31
||||||| ||||| |||||||||||||||||
Sbjct: 110 tgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 63 caagaatcggtcgataaacctctgcatccagcg 95
||||||||| |||||||||||||||||||||||
Sbjct: 69 caagaatcgatcgataaacctctgcatccagcg 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tgaagtcactggatgcagcggttcatcgatc 31
||||||| ||||| |||||||||||||||||
Sbjct: 4 tgaagtcgctggaggcagcggttcatcgatc 34
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 gaagtcactggatgcagcggttcatcgatctcttcctgaa 41
|||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccag 93
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>48705_mtr-miR162b:pmrd
Length = 85
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 10 tggatgcagcggttcatcgatctcttcctgaa 41
||||||||||||||||||||||| ||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaa 32
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatcca 92
|||||||||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>46937_ath-miR162a:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 5e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 4 agtcactggatgcagcggttcatcgatctcttcctg 39
|||| ||||| |||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcgtt 97
|||||||||||||||||||||||||
Sbjct: 89 tcgataaacctctgcatccagcgtt 113
>48682_llu-miR162:pmrd
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ctggatgcagcggttcatcgatctcttcctgaa 41
||||| ||||||||| |||||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaa 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatccag 80
>48546_gma-miR162m:pmrd
Length = 367
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcgttcact 101
||||||||||||||||||||||| |||||
Sbjct: 1 tcgataaacctctgcatccagcgctcact 29
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
>48685_lsa-miR162:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 73 tcgataaacctctgcatccagcgttcac 100
||||||||||||||||||||||| ||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
|||||| ||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 66 gaatcggtcgataaacctctgcatccag 93
|||||| ||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
