miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54804_vvi-miR169b:pmrd
Length = 105
Score = 208 bits (105), Expect = 6e-55
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 ggggtcgaattgagccaaggatggcttgccgtcatctgcagcaagagttggagactttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggtcgaattgagccaaggatggcttgccgtcatctgcagcaagagttggagactttta 60
Query: 61 actgtgcgtgcacggttagtcatccttggctcatttggcccttct 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgtgcgtgcacggttagtcatccttggctcatttggcccttct 105
>54814_vvi-miR169l:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 5e-12
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 2 gggtcgaattgagccaaggatggcttgccgtcatctgcagcaagagttggagacttttaa 61
|||| ||||||||||||||||| ||||||||| | |||| |||| ||| || |||||
Sbjct: 2 gggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaag--ctttaa 59
Query: 62 ctgtgcgtgcacggttagtcatccttggctcatttggccc 101
||| || ||||||| |||| || |||||||||||||||||
Sbjct: 60 ctgggcatgcacggctagttattcttggctcatttggccc 99
>54810_vvi-miR169h:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 gggtcgaattgagccaaggatggcttgccgtc 33
|||| |||||||||||||||||||||||||||
Sbjct: 2 gggtggaattgagccaaggatggcttgccgtc 33
>54818_vvi-miR169p:pmrd
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 7 gaattgagccaaggatggcttgccgtcatctgcagcaag 45
||||||||||||||||| ||||||| || ||||||||||
Sbjct: 7 gaattgagccaaggatgacttgccggcagctgcagcaag 45
>54817_vvi-miR169o:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatggcttgccgtcatctgcagcaag 45
|||||||||||||| ||||||| |||| ||||||||
Sbjct: 10 ttgagccaaggatgacttgccgccatcagcagcaag 45
>54816_vvi-miR169n:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 7 gaattgagccaaggatggcttgccgtcatctgcagcaag 45
|||| |||||||||||| ||||||| || ||||||||||
Sbjct: 7 gaatagagccaaggatgacttgccggcaactgcagcaag 45
>54815_vvi-miR169m:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 tgagccaaggatggcttgccgtcatctgcagcaag 45
||||||||||||| ||||||| || ||||||||||
Sbjct: 11 tgagccaaggatgacttgccggcagctgcagcaag 45
>54811_vvi-miR169i:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 2 gggtcgaattgagccaaggatggcttgccgtcat 35
|||| ||||||||||||||||| || ||||||||
Sbjct: 2 gggtggaattgagccaaggatgactggccgtcat 35
>46965_ath-miR169f:pmrd
Length = 167
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gaattgagccaaggatggcttgccg 31
||||||||||||||||| |||||||
Sbjct: 28 gaattgagccaaggatgacttgccg 52
>54819_vvi-miR169q:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 2 gggtcgaattgagccaaggatggcttgccgtcatctgcag 41
|||| |||| |||||||||||| ||||||| ||| |||||
Sbjct: 2 gggtggaatagagccaaggatgacttgccggcatttgcag 41
