miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54806_vvi-miR169d:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagaggc 60
Query: 61 tataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 120
>54803_vvi-miR169a:pmrd
Length = 124
Score = 214 bits (108), Expect = 1e-56
Identities = 117/120 (97%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagaggc 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagtggaatgcagccaaggatgacttgccggaatttatatatagtgagaagagaagaggc 62
Query: 61 tataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tatatgctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattctc 122
>52491_ptc-miRf10669-akr:pmrd
Length = 110
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccgg 31
||||||||||||||||||||||||||
Sbjct: 1 gaatgcagccaagaatgatttgccgg 26
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 accctggcaagttgtccttggctacattt 113
|||| |||||||||| |||||||||||||
Sbjct: 82 accccggcaagttgttcttggctacattt 110
>51683_ptc-miR169z:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gaatgcagccaagaatgatttgccgg 31
||||||||||||||||||||||||||
Sbjct: 6 gaatgcagccaagaatgatttgccgg 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 accctggcaagttgtccttggctacatttg 114
|||| |||||||||| ||||||||||||||
Sbjct: 87 accccggcaagttgttcttggctacatttg 116
>54813_vvi-miR169k:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatag 44
||||||| |||||||||| |||| ||||||||||| | ||||||
Sbjct: 3 gagtggagtgcagccaaggatgacttgccggaattcacatatag 46
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 ccctggcaagttgtccttggctac 109
|||||||| |||||||||||||||
Sbjct: 86 ccctggcaggttgtccttggctac 109
>54812_vvi-miR169j:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaatttatatatag 44
||||||| |||||||||| |||| ||||||||||| | ||||||
Sbjct: 3 gagtggagtgcagccaaggatgacttgccggaattcacatatag 46
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 ccctggcaagttgtccttggctac 109
|||||||| |||||||||||||||
Sbjct: 86 ccctggcaggttgtccttggctac 109
>54805_vvi-miR169c:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 ggcaagttgtccttggctacatt 112
|||||||||||||||||||||||
Sbjct: 58 ggcaagttgtccttggctacatt 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccgga 32
|||| ||||||||||||| |||| ||||||||
Sbjct: 3 gagtagaatgcagccaaggatgacttgccgga 34
>46960_ath-miR169a:pmrd
Length = 226
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 ggcaagttgtccttggctaca 110
|||||||||||||||||||||
Sbjct: 190 ggcaagttgtccttggctaca 210
>51664_ptc-miR169g:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaattt 36
|||| ||||||||||||| |||| ||||||| ||||
Sbjct: 1 gagtagaatgcagccaaggatgacttgccggcattt 36
>51661_ptc-miR169d:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 gagtggaatgcagccaagaatgatttgccggaattt 36
|||| ||||||||||||| |||| ||||||| ||||
Sbjct: 1 gagtcgaatgcagccaaggatgacttgccggcattt 36
>48877_osa-miR169b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 ggcaagttgtccttggctac 109
||||||||||||||||||||
Sbjct: 100 ggcaagttgtccttggctac 119
