miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54810_vvi-miR169h:pmrd
          Length = 101

 Score =  200 bits (101), Expect = 1e-52
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60

                                                    
Query: 61  gtcacgcacggagggttatccttgactcctttagctcctct 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtcacgcacggagggttatccttgactcctttagctcctct 101




>54811_vvi-miR169i:pmrd
          Length = 105

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 90/105 (85%), Gaps = 4/105 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtggaattgagccaaggatggcttgccgtcctttgtca----ctatttgaggcatta 56
           ||||||||||||||||||||||| || |||||| ||| |||     |||||||||| |||
Sbjct: 1   agggtggaattgagccaaggatgactggccgtcatttttcagttggtatttgaggcttta 60

                                                        
Query: 57  actggtcacgcacggagggttatccttgactcctttagctcctct 101
           |||||||| ||||||  |||||||| || ||||||||||||||||
Sbjct: 61  actggtcatgcacggctggttatccctgtctcctttagctcctct 105




>54814_vvi-miR169l:pmrd
          Length = 103

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 1  agggtggaattgagccaaggatggcttgccgtcctttg 38
          ||||||||||||||||||||||| ||||||||||||||
Sbjct: 1  agggtggaattgagccaaggatgacttgccgtcctttg 38




>54804_vvi-miR169b:pmrd
          Length = 105

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 2  gggtggaattgagccaaggatggcttgccgtc 33
          |||| |||||||||||||||||||||||||||
Sbjct: 2  gggtcgaattgagccaaggatggcttgccgtc 33




>54823_vvi-miR169u:pmrd
          Length = 110

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 1  agggtggaattgagccaaggatggcttgccgt 32
          |||||||||||||| |||||||| ||||||||
Sbjct: 1  agggtggaattgagtcaaggatgacttgccgt 32




>54818_vvi-miR169p:pmrd
          Length = 102

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 4  gtggaattgagccaaggatggcttgccg 31
          |||||||||||||||||||| |||||||
Sbjct: 4  gtggaattgagccaaggatgacttgccg 31




>54820_vvi-miR169r:pmrd
          Length = 109

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  agggtggaattgagccaaggatggcttgccg 31
          |||||||||||||| |||||||| |||||||
Sbjct: 1  agggtggaattgagtcaaggatgacttgccg 31




>54819_vvi-miR169q:pmrd
          Length = 97

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  agggtggaattgagccaaggatggcttgccg 31
          |||||||||| |||||||||||| |||||||
Sbjct: 1  agggtggaatagagccaaggatgacttgccg 31




>54817_vvi-miR169o:pmrd
          Length = 103

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 1  agggtggaattgagccaaggatggcttgccg 31
          |||||||| |||||||||||||| |||||||
Sbjct: 1  agggtggatttgagccaaggatgacttgccg 31




>46965_ath-miR169f:pmrd
          Length = 167

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 5  tggaattgagccaaggatggcttgccg 31
          ||||||||||||||||||| |||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52




>54816_vvi-miR169n:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 4  gtggaattgagccaaggatggcttgccg 31
          ||||||| |||||||||||| |||||||
Sbjct: 4  gtggaatagagccaaggatgacttgccg 31




>54815_vvi-miR169m:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 4  gtggaattgagccaaggatggcttgccg 31
          |||||| ||||||||||||| |||||||
Sbjct: 4  gtggaagtgagccaaggatgacttgccg 31




>51671_ptc-miR169n:pmrd
          Length = 107

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 4  gtggaattgagccaaggatggcttgccg 31
          ||||| |||||||||||||| |||||||
Sbjct: 4  gtggatttgagccaaggatgacttgccg 31