miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54814_vvi-miR169l:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaagctttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaagctttaac 60
Query: 61 tgggcatgcacggctagttattcttggctcatttggcccctct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcatgcacggctagttattcttggctcatttggcccctct 103
>54817_vvi-miR169o:pmrd
Length = 103
Score = 117 bits (59), Expect = 2e-27
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaagctttaac 60
|||||||| |||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccgccatcagcagcaagcattgaagctttaac 60
Query: 61 tgggcatgcacggctagttattcttggctcatttggcccctct 103
|||||||| || || ||||||||||||||||| |||||||||
Sbjct: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
>54810_vvi-miR169h:pmrd
Length = 101
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttg 38
||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgtcctttg 38
>54804_vvi-miR169b:pmrd
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 84/100 (84%), Gaps = 2/100 (2%)
Strand = Plus / Plus
Query: 2 gggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaag--ctttaa 59
|||| ||||||||||||||||| ||||||||| | |||| |||| ||| || |||||
Sbjct: 2 gggtcgaattgagccaaggatggcttgccgtcatctgcagcaagagttggagacttttaa 61
Query: 60 ctgggcatgcacggctagttattcttggctcatttggccc 99
||| || ||||||| |||| || |||||||||||||||||
Sbjct: 62 ctgtgcgtgcacggttagtcatccttggctcatttggccc 101
>54811_vvi-miR169i:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtc 33
|||||||||||||||||||||||||| ||||||
Sbjct: 1 agggtggaattgagccaaggatgactggccgtc 33
>54823_vvi-miR169u:pmrd
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgt 32
|||||||||||||| |||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgt 32
>54819_vvi-miR169q:pmrd
Length = 97
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccgtcctttgca 40
|||||||||| |||||||||||||||||||| | ||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccggcatttgca 40
>54818_vvi-miR169p:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>54820_vvi-miR169r:pmrd
Length = 109
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccg 31
|||||||||||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>46965_ath-miR169f:pmrd
Length = 167
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatgacttgccg 31
|||||||||||||||||||||||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52
>54816_vvi-miR169n:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||| ||||||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccg 31
>54815_vvi-miR169m:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
|||||| |||||||||||||||||||||
Sbjct: 4 gtggaagtgagccaaggatgacttgccg 31
>51671_ptc-miR169n:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||| ||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccg 31
>54822_vvi-miR169t:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaatcgagtcaaggatgacttgccg 31
>46964_ath-miR169e:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 attgagccaaggatgacttgccg 31
|||||||||||||||||||||||
Sbjct: 67 attgagccaaggatgacttgccg 89
>46963_ath-miR169d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 attgagccaaggatgacttgccg 31
|||||||||||||||||||||||
Sbjct: 39 attgagccaaggatgacttgccg 61
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 19 ttgagccaaggatgacttgccg 40
>46967_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>46966_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>54803_vvi-miR169a:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||| |||||||||||||||||||
Sbjct: 5 gtggaatgcagccaaggatgacttgccg 32
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 aattgagccaaggatgacttgccg 31
|||| |||||||||||||||||||
Sbjct: 115 aattcagccaaggatgacttgccg 92
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 8 aattgagccaaggatgacttgccg 31
|||| |||||||||||||||||||
Sbjct: 114 aattcagccaaggatgacttgccg 91
>52490_ptc-miRf10668-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccg 31
||||||||||||||||||||
Sbjct: 1 gagccaaggatgacttgccg 20
>51665_ptc-miR169h:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aattgagccaaggatgacttgccg 31
|||| |||||||||||||||||||
Sbjct: 7 aattcagccaaggatgacttgccg 30
>48310_bdi-miR169b:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatgacttgccg 31
||||||| |||||||||||||||||||
Sbjct: 11 gtggaatgtagccaaggatgacttgccg 38
