miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54817_vvi-miR169o:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccgccatcagcagcaagcattgaagctttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccgccatcagcagcaagcattgaagctttaac 60
Query: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
>54814_vvi-miR169l:pmrd
Length = 103
Score = 117 bits (59), Expect = 2e-27
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccgccatcagcagcaagcattgaagctttaac 60
|||||||| |||||||||||||||||||||| | | ||| |||||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatgacttgccgtcctttgcatcaagcattgaagctttaac 60
Query: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
|||||||| || || ||||||||||||||||| |||||||||
Sbjct: 61 tgggcatgcacggctagttattcttggctcatttggcccctct 103
>51671_ptc-miR169n:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgc 32
|||||||||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccgc 32
>54818_vvi-miR169p:pmrd
Length = 102
Score = 52.0 bits (26), Expect = 8e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgccatcagcagcaag 45
||||| |||||||||||||||||||||| || | ||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccggcagctgcagcaag 45
>54804_vvi-miR169b:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccgccatcagcagcaag 45
|||||||||||||| ||||||| |||| ||||||||
Sbjct: 10 ttgagccaaggatggcttgccgtcatctgcagcaag 45
>54823_vvi-miR169u:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>54820_vvi-miR169r:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>54819_vvi-miR169q:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| | ||||||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>54815_vvi-miR169m:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 tgagccaaggatgacttgccgccatcagcagcaag 45
||||||||||||||||||||| || | ||||||||
Sbjct: 11 tgagccaaggatgacttgccggcagctgcagcaag 45
>54811_vvi-miR169i:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||||||||||||||| ||||
Sbjct: 1 agggtggaattgagccaaggatgactggccg 31
>54810_vvi-miR169h:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| |||||||||||||| |||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccg 31
>46965_ath-miR169f:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggatttgagccaaggatgacttgccg 31
|||| ||||||||||||||||||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52
>54816_vvi-miR169n:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccgccatcagcagcaag 45
|||||||||||||||||||| || | ||||||||
Sbjct: 12 gagccaaggatgacttgccggcaactgcagcaag 45
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 19 ttgagccaaggatgacttgccg 40
>46967_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>46966_ath-miR169g:pmrd
Length = 379
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 143 ttgagccaaggatgacttgccg 164
>46964_ath-miR169e:pmrd
Length = 217
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 68 ttgagccaaggatgacttgccg 89
>46963_ath-miR169d:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 40 ttgagccaaggatgacttgccg 61
>52490_ptc-miRf10668-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccgc 32
|||||||||||||||||||||
Sbjct: 1 gagccaaggatgacttgccgc 21
>54821_vvi-miR169s:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccg 31
||||||| |||||||||||||||||||
Sbjct: 5 gtggattgcagccaaggatgacttgccg 32
