miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54822_vvi-miR169t:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
>54820_vvi-miR169r:pmrd
Length = 109
Score = 163 bits (82), Expect = 3e-41
Identities = 104/110 (94%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
|||||||||| |||||||||||||||||||||||||||||||| ||||| | |||| |||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagg-catgcagggg 59
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cttttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 109
>54823_vvi-miR169u:pmrd
Length = 110
Score = 147 bits (74), Expect = 2e-36
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
|||||||||| |||||||||||||||||||| ||||||||||| ||||| | ||| |||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
>54819_vvi-miR169q:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>54814_vvi-miR169l:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatcgagtcaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatgacttgccg 31
>54818_vvi-miR169p:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaatcgagtcaaggatgacttgccg 31
||||||| ||| ||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>54816_vvi-miR169n:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaatcgagtcaaggatgacttgccg 31
||||||| ||| ||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccg 31
