miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54823_vvi-miR169u:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
>54820_vvi-miR169r:pmrd
Length = 109
Score = 163 bits (82), Expect = 3e-41
Identities = 104/110 (94%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgatatatatttgcagaagg-catgcagggg 59
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
| ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 60 cttttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 109
>54822_vvi-miR169t:pmrd
Length = 110
Score = 147 bits (74), Expect = 2e-36
Identities = 101/110 (91%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgttatatatttgcagaagggcacgcagggg 60
|||||||||| |||||||||||||||||||| ||||||||||| ||||| | ||| |||
Sbjct: 1 agggtggaatcgagtcaaggatgacttgccgatatatatttgcggaaggacttgcatggg 60
Query: 61 cctttagctatgtgttaccggcaagttgacttgactctgtttggccctct 110
||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 61 cctttagctatgtgtaaccggcaagttgacttgactcagtttggccctct 110
>54814_vvi-miR169l:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgt 32
|||||||||||||| |||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatgacttgccgt 32
>54818_vvi-miR169p:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagtcaaggatgacttgccg 31
||||||||||| ||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>54811_vvi-miR169i:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgt 32
|||||||||||||| ||||||||||| |||||
Sbjct: 1 agggtggaattgagccaaggatgactggccgt 32
>54810_vvi-miR169h:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccgt 32
|||||||||||||| |||||||| ||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgt 32
>54819_vvi-miR169q:pmrd
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>54817_vvi-miR169o:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagtcaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>46965_ath-miR169f:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagtcaaggatgacttgccg 31
|||||||||| ||||||||||||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52
>54816_vvi-miR169n:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagtcaaggatgacttgccg 31
||||||| ||| ||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccg 31
>54815_vvi-miR169m:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagtcaaggatgacttgccg 31
|||||| |||| ||||||||||||||||
Sbjct: 4 gtggaagtgagccaaggatgacttgccg 31
>51671_ptc-miR169n:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagtcaaggatgacttgccg 31
||||| ||||| ||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccg 31
