miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54827_vvi-miR169y:pmrd
Length = 248
Score = 492 bits (248), Expect = e-140
Identities = 248/248 (100%)
Strand = Plus / Plus
Query: 1 cgttgtttggtagcgaaggatgacttgcctacagcctccttaaggtttcaaaataccgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgttgtttggtagcgaaggatgacttgcctacagcctccttaaggtttcaaaataccgag 60
Query: 61 cttgtctacctttgatcaaatgattcaagaaacaaaagaaaagaaaggccatggcagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgtctacctttgatcaaatgattcaagaaacaaaagaaaagaaaggccatggcagcca 120
Query: 121 tccatcagagtcaacatgagaatcatgttctatagaaattggagtcattcttgagaatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccatcagagtcaacatgagaatcatgttctatagaaattggagtcattcttgagaatga 180
Query: 181 acacgacactattagcttggaatctataatgtggtttatggcaagtctccttggcacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacgacactattagcttggaatctataatgtggtttatggcaagtctccttggcacctg 240
Query: 241 atggcctc 248
||||||||
Sbjct: 241 atggcctc 248
>51668_ptc-miR169k:pmrd
Length = 203
Score = 50.1 bits (25), Expect = 8e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcctacagcctcc 39
|||||||||||| ||||||||||||||| |||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcctgtagcctcc 39
>54440_sbi-miR169d:pmrd
Length = 125
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcctaca 33
||||||||| ||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcctaca 43
>54439_sbi-miR169c:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcctaca 33
||||||||| ||||||||||||||||||
Sbjct: 16 tttggtagccaaggatgacttgcctaca 43
>52726_ptc-miRf10904-akr:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||||||||||| |||||||||||||||
Sbjct: 7 ttgtttggtagccaaggatgacttgcct 34
>51670_ptc-miR169m:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||||||||||| |||||||||||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcct 30
>51666_ptc-miR169i:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||||||||||| |||||||||||||||
Sbjct: 3 ttgtttggtagccaaggatgacttgcct 30
>48487_ghb-miR169a:pmrd
Length = 189
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||||||||||| |||||||||||||||
Sbjct: 42 ttgtttggtagccaaggatgacttgcct 69
>51675_ptc-miR169r:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 gtttggtagcgaaggatgacttgccta 31
|||||||||| ||||||||||||||||
Sbjct: 5 gtttggtagccaaggatgacttgccta 31
>48355_bna-miR169f:pmrd
Length = 201
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcctac 32
||||||||| |||||||||||||||||
Sbjct: 26 tttggtagccaaggatgacttgcctac 52
>48353_bna-miR169d:pmrd
Length = 220
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcctac 32
||||||||| |||||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcctac 61
>55009_zma-miR169g:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 tggtagcgaaggatgacttgcctaca 33
||||||| ||||||||||||||||||
Sbjct: 18 tggtagccaaggatgacttgcctaca 43
>51680_ptc-miR169w:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tgtttggtagcgaaggatgacttgcc 29
||||||||||| ||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>51679_ptc-miR169v:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tgtttggtagcgaaggatgacttgcc 29
||||||||||| ||||||||||||||
Sbjct: 3 tgtttggtagccaaggatgacttgcc 28
>48354_bna-miR169e:pmrd
Length = 276
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgccta 31
||||||||| ||||||||||||||||
Sbjct: 246 tttggtagccaaggatgacttgccta 271
>48352_bna-miR169c:pmrd
Length = 176
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgccta 31
||||||||| ||||||||||||||||
Sbjct: 21 tttggtagccaaggatgacttgccta 46
>54548_sly-miR169b:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcct 30
||||||||| |||||||||||||||
Sbjct: 166 tttggtagccaaggatgacttgcct 190
>48360_bna-miR169k:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 gttgtttggtagcgaaggatgacttgcct 30
||||| ||||||| |||||||||||||||
Sbjct: 25 gttgtgtggtagccaaggatgacttgcct 53
>48357_bna-miR169h:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 gttgtttggtagcgaaggatgacttgcct 30
||||| ||||||| |||||||||||||||
Sbjct: 28 gttgtgtggtagccaaggatgacttgcct 56
>48356_bna-miR169g:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 gttgtttggtagcgaaggatgacttgcct 30
||||| ||||||| |||||||||||||||
Sbjct: 28 gttgtgtggtagccaaggatgacttgcct 56
>46973_ath-miR169m:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcct 30
||||||||| |||||||||||||||
Sbjct: 37 tttggtagccaaggatgacttgcct 61
>46971_ath-miR169k:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcct 30
||||||||| |||||||||||||||
Sbjct: 38 tttggtagccaaggatgacttgcct 62
>46969_ath-miR169i:pmrd
Length = 206
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tttggtagcgaaggatgacttgcct 30
||||||||| |||||||||||||||
Sbjct: 35 tttggtagccaaggatgacttgcct 59
>46873_aqc-miR169a:pmrd
Length = 158
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 tgtttggtagcgaaggatgacttgcctac 32
||||| ||||| |||||||||||||||||
Sbjct: 19 tgtttagtagccaaggatgacttgcctac 47
>54826_vvi-miR169x:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tggtagcgaaggatgacttgccta 31
||||||| ||||||||||||||||
Sbjct: 9 tggtagccaaggatgacttgccta 32
>51669_ptc-miR169l:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
||||||| |||| |||||||||||||||
Sbjct: 3 ttgtttgatagccaaggatgacttgcct 30
>51667_ptc-miR169j:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
||||||| |||| |||||||||||||||
Sbjct: 3 ttgtttgatagccaaggatgacttgcct 30
>48882_osa-miR169g:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 tggtagcgaaggatgacttgccta 31
||||||| ||||||||||||||||
Sbjct: 8 tggtagccaaggatgacttgccta 31
>47103_ath-miRf10003-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||| ||||||| |||||||||||||||
Sbjct: 129 ttgtgtggtagccaaggatgacttgcct 102
>46968_ath-miR169h:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3 ttgtttggtagcgaaggatgacttgcct 30
|||| ||||||| |||||||||||||||
Sbjct: 38 ttgtgtggtagccaaggatgacttgcct 65
