miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54832_vvi-miR171e:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ggaaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagagccgtaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagagccgtaaag 60
Query: 61 aacgatctctgattgagccgcgccaatatcactttctgctaag 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgatctctgattgagccgcgccaatatcactttctgctaag 103
>54554_sly-miR171d:pmrd
Length = 112
Score = 91.7 bits (46), Expect = 9e-20
Identities = 79/89 (88%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttacgaagagc--cgtaaagaacga 65
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||||
Sbjct: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
Query: 66 tctctgattgagccgcgccaatatcactt 94
|||| ||||||||||||||||||||||||
Sbjct: 68 tctcagattgagccgcgccaatatcactt 96
>48497_ghr-miR171:pmrd
Length = 85
Score = 83.8 bits (42), Expect = 2e-17
Identities = 74/85 (87%), Gaps = 6/85 (7%)
Strand = Plus / Plus
Query: 12 gatgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaacga 65
|||||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 66 tctctgattgagccgcgccaatatc 90
|||| ||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>51686_ptc-miR171c:pmrd
Length = 104
Score = 81.8 bits (41), Expect = 9e-17
Identities = 87/101 (86%), Gaps = 6/101 (5%)
Strand = Plus / Plus
Query: 3 aaagtaagcgatgttggtgaggttcaatccgaagacggatttac----gaa--gagccgt 56
|||| ||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgt 61
Query: 57 aaagaacgatctctgattgagccgcgccaatatcactttct 97
||| |||||||| |||||||||||||||||||||||||||
Sbjct: 62 aaaatacgatctcagattgagccgcgccaatatcactttct 102
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 79.8 bits (40), Expect = 4e-16
Identities = 83/96 (86%), Gaps = 6/96 (6%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttac----gaa--gagccgtaaaga 61
||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct: 4 aagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgtaaaat 63
Query: 62 acgatctctgattgagccgcgccaatatcactttct 97
|||||||| |||||||||||||||||||||||||||
Sbjct: 64 acgatctcagattgagccgcgccaatatcactttct 99
>51687_ptc-miR171d:pmrd
Length = 100
Score = 75.8 bits (38), Expect = 6e-15
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 3 aaagtaagcgatgttggtgaggttcaatccgaagacggatttacgaagag---ccgtaaa 59
|||| ||||||||||||||||||||||||||||||| ||||||| | ||| |||||
Sbjct: 2 aaagaaagcgatgttggtgaggttcaatccgaagacagatttac-acgagtgaaagtaaa 60
Query: 60 gaacgatctctgattgagccgcgccaatatcacttt 95
||||||| |||||||||||||||||||||||||
Sbjct: 61 atccgatctcagattgagccgcgccaatatcacttt 96
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 73.8 bits (37), Expect = 2e-14
Identities = 79/91 (86%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatccgaagacggatttacgaagag---ccgtaaagaacg 64
||||||||||||||||||||||||||||||| ||||||| | ||| ||||| ||
Sbjct: 3 aagcgatgttggtgaggttcaatccgaagacagatttac-acgagtgaaagtaaaatccg 61
Query: 65 atctctgattgagccgcgccaatatcacttt 95
||||| |||||||||||||||||||||||||
Sbjct: 62 atctcagattgagccgcgccaatatcacttt 92
>54833_vvi-miR171f:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 gatctctgattgagccgcgccaatatcacttt 95
|||||| |||||||||||||||||||||||||
Sbjct: 64 gatctcagattgagccgcgccaatatcacttt 95
>54461_sbi-miR171j:pmrd
Length = 108
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 ctgattgagccgcgccaatatcactt 94
||||||||||||||||||||||||||
Sbjct: 82 ctgattgagccgcgccaatatcactt 107
>55037_zma-miR171j:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tctctgattgagccgcgccaatatcac 92
||||||||||||||| |||||||||||
Sbjct: 86 tctctgattgagccgtgccaatatcac 112
>55028_zma-miR171a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgcgccaatatc 99
>54553_sly-miR171c:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatcac 92
|||||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatcac 100
>54458_sbi-miR171g:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 55 tctgattgagccgcgccaatatc 77
>54453_sbi-miR171b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tctctgattgagccgcgccaatatcac 92
||||||||||||||| |||||||||||
Sbjct: 89 tctctgattgagccgtgccaatatcac 115
>48895_osa-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 65 tctgattgagccgcgccaatatc 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatccga 34
|||||| |||||||||||||||||||
Sbjct: 7 agcgatattggtgaggttcaatccga 32
>48407_bra-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 82 tctgattgagccgcgccaatatc 104
>48369_bna-miR171g:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 76 tctgattgagccgcgccaatatc 98
>48368_bna-miR171f:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 82 tctgattgagccgcgccaatatc 104
>46980_ath-miR171m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgcgccaatatc 92
>46977_ath-miR171a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 86 tctgattgagccgcgccaatatc 108
>46975_ath-miR170m:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatc 90
|||||||||||||||||||||||
Sbjct: 70 tctgattgagccgcgccaatatc 92
>54667_stu-miR171:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatca 91
||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatca 22
>54666_stu-miR170:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatca 91
||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatca 22
>51383_ppt-miR171b:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatcac 86
>51382_ppt-miR171a:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatcac 85
>46853_ace-miR171c:pmrd
Length = 216
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ctgattgagccgcgccaatatc 90
||||||||||||||||||||||
Sbjct: 195 ctgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ctgattgagccgcgccaatatc 90
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>46850_ace-miR170d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ctgattgagccgcgccaatatc 90
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>55027_zma-miR170p:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 42 tgattgagccgcgccaatatc 62
>54582_smo-miR171d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 attgagccgcgccaatatcac 92
|||||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatcac 91
>54451_sbi-miR170:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 35 tgattgagccgcgccaatatc 55
>51691_ptc-miR171h:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
||||||||||||| |||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
||||||||||||| |||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>51689_ptc-miR171f:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 66 tctctgattgagccgcgccaatatc 90
||||||||||||||| |||||||||
Sbjct: 97 tctctgattgagccgtgccaatatc 121
>51342_ppd-miR170:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 277 tgattgagccgcgccaatatc 297
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
||||||||||||| |||||||||||
Sbjct: 93 tctgattgagccgtgccaatatcac 117
>48900_osa-miR171f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
||||||||||||| |||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcac 119
>48636_gra-miR171:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 185 tgattgagccgcgccaatatc 205
>48313_bdi-miR171d:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 81 tgattgagccgcgccaatatc 101
>48311_bdi-miR171a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatc 70
>46982_ath-miR171o:pmrd
Length = 339
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 319 tgattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46976_ath-miR170n:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>46877_aqc-miR171b:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatcac 92
||||||||||||| |||||||||||
Sbjct: 53 tctgattgagccgtgccaatatcac 77
>46851_ace-miR171a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46849_ace-miR170c:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>46847_ace-miR170a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 tgattgagccgcgccaatatc 90
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54836_vvi-miR171i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatca 91
||||||||||||| ||||||||||
Sbjct: 67 tctgattgagccgtgccaatatca 90
>54828_vvi-miR171a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 tctgattgagccgcgccaatatca 91
||||||||||||| ||||||||||
Sbjct: 66 tctgattgagccgtgccaatatca 89
>54680_tae-miR170b:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 ctctgattgagccgcgccaatatc 90
|||||||||||||| |||||||||
Sbjct: 71 ctctgattgagccgtgccaatatc 94
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
