miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54836_vvi-miR171i:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 gaagaaggtggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagaaggtggggatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtc 60
Query: 61 ctttaatctgattgagccgtgccaatatcatcatgttcacttc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttaatctgattgagccgtgccaatatcatcatgttcacttc 103
>46877_aqc-miR171b:pmrd
Length = 77
Score = 89.7 bits (45), Expect = 4e-19
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 15 tgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattg 74
|||||||||||||||||||||| ||| ||| ||| | || |||||||||||||||||||
Sbjct: 3 tgttggaatggctcaatcaaatgaaagctctcaaagatt--gggtcctttaatctgattg 60
Query: 75 agccgtgccaatatca 90
||||||||||||||||
Sbjct: 61 agccgtgccaatatca 76
>51691_ptc-miR171h:pmrd
Length = 100
Score = 87.7 bits (44), Expect = 1e-18
Identities = 75/85 (88%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 10 ggggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtccttta 65
||||||||||| |||||||||||| |||||||||||||| | | ||||||| ||||
Sbjct: 8 ggggatgttgggatggctcaatcatatcaaatctcccaaactatgatgttgggtcgttta 67
Query: 66 atctgattgagccgtgccaatatca 90
|||||||||||||||||||||||||
Sbjct: 68 atctgattgagccgtgccaatatca 92
>51690_ptc-miR171g:pmrd
Length = 100
Score = 79.8 bits (40), Expect = 4e-16
Identities = 74/85 (87%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 10 ggggatgttggaatggctcaatcaaatcaaatctcccaag----ggttttgggtccttta 65
||||||||||| |||||||||||| ||||||||||||| | | ||||||| ||||
Sbjct: 8 ggggatgttgggatggctcaatcatgtcaaatctcccaaattatgatgttgggtctttta 67
Query: 66 atctgattgagccgtgccaatatca 90
|||||||||||||||||||||||||
Sbjct: 68 atctgattgagccgtgccaatatca 92
>51346_ppe-miR171:pmrd
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctg 70
|||||||| |||||||||||||||||| || ||| ||| |||||||||||||| ||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 68
Query: 71 attgagccgtgccaatatcat 91
|||||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatcat 89
>51345_ppe-miR170:pmrd
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctg 70
|||||||| |||||||||||||||||| || ||| ||| |||||||||||||| ||
Sbjct: 9 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 68
Query: 71 attgagccgtgccaatatcat 91
|||||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatcat 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 71.9 bits (36), Expect = 9e-14
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 72
|||||||| | |||||||||||| |||| || ||| |||| | |||||||||||||||
Sbjct: 14 gatgttgggacggctcaatcaaaccaaagatctcaatggtt--gagtcctttaatctgat 71
Query: 73 tgagccgtgccaatatcat 91
|||||||||||||||||||
Sbjct: 72 tgagccgtgccaatatcat 90
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 25 gctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattgagccgtgcca 84
|||||||||||||||| | | ||| |||| |||| |||| |||||||||||||||||||
Sbjct: 18 gctcaatcaaatcaaagcactcaatggtt--gggttctttcatctgattgagccgtgcca 75
Query: 85 atatc 89
|||||
Sbjct: 76 atatc 80
>51688_ptc-miR171e:pmrd
Length = 94
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 25 gctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgattgagccgtgcca 84
|||||||||||||||| | | ||| |||| |||| |||| |||||||||||||||||||
Sbjct: 23 gctcaatcaaatcaaagcactcaatggtt--gggttctttcatctgattgagccgtgcca 80
Query: 85 atatc 89
|||||
Sbjct: 81 atatc 85
>55037_zma-miR171j:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatca 111
>54453_sbi-miR171b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatca 114
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatca 116
>48900_osa-miR171f:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatca 90
||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatca 118
>55032_zma-miR171e:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>54460_sbi-miR171i:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatc 135
>51689_ptc-miR171f:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatc 121
>48905_osa-miR171n:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 tctgattgagccgtgccaatatc 89
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgtgccaatatc 78
>55036_zma-miR171i:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatca 86
>55033_zma-miR171f:pmrd
Length = 155
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatca 136
>55029_zma-miR171b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatca 83
>54831_vvi-miR171d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>54830_vvi-miR171c:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>54462_sbi-miR171k:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatca 83
>54452_sbi-miR171a:pmrd
Length = 161
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatca 143
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatca 84
>51685_ptc-miR171b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatca 92
>51684_ptc-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatca 93
>48897_osa-miR171c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatca 90
>48896_osa-miR171b:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>48403_bra-miR171a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatca 83
>48386_bol-miR171a:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>48367_bna-miR171e:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>48366_bna-miR171d:pmrd
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatca 89
>48312_bdi-miR171c:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatca 85
>46979_ath-miR171c:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatca 90
||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatca 108
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54579_smo-miR171a:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatca 123
>54551_sly-miR171a:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>51692_ptc-miR171i:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatc 120
>48723_mtr-miR171g:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
>48406_bra-miR171d:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91
>48405_bra-miR171c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85
>48404_bra-miR171b:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92
>48365_bna-miR171c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85
>48364_bna-miR171b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91
>48363_bna-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92
>46978_ath-miR171b:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 gattgagccgtgccaatatca 90
|||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatca 96
>46880_aqc-miR171e:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgattgagccgtgccaatatc 89
|||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatc 100
