miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54839_vvi-miR172c:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttgcggatggagcatcatcaagattcacaagtattgagactcagtgcgtggtggtgat 60
Query: 61 ggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtgacttttgtggtcccttcctacactccgatggctctttgatgtgggaatcttgatga 120
Query: 121 tgctgcagcggcaataaa 138
||||||||||||||||||
Sbjct: 121 tgctgcagcggcaataaa 138
>51704_ptc-miR172g:pmrd
Length = 143
Score = 71.9 bits (36), Expect = 1e-13
Identities = 113/134 (84%), Gaps = 6/134 (4%)
Strand = Plus / Plus
Query: 9 atggagcatcatcaagattcacaag---tattgagactcagtgcgtggtggtgatggtga 65
||||||||||||||||||||||||| |||| | || |||| |||||| ||||||||
Sbjct: 11 atggagcatcatcaagattcacaagctttattagggct-agtgtgtggtgatgatggtgg 69
Query: 66 cttttg-tggtcccttccta-cactccgatggctctttgatgtgggaatcttgatgatgc 123
|||||| ||||||||| | || ||| || || |||||| ||||||||||||||||||
Sbjct: 70 cttttggtggtccctttttttcaatccaatagccctttgaattgggaatcttgatgatgc 129
Query: 124 tgcagcggcaataa 137
||||||||||||||
Sbjct: 130 tgcagcggcaataa 143
>53842_ptc-miRf12020-akr:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 110/131 (83%), Gaps = 6/131 (4%)
Strand = Plus / Plus
Query: 9 atggagcatcatcaagattcacaag---tattgagactcagtgcgtggtggtgatggtga 65
||||||||||||||||||||||||| |||| | || |||| |||||| ||||||||
Sbjct: 7 atggagcatcatcaagattcacaagctttattagggct-agtgtgtggtgatgatggtgg 65
Query: 66 cttttg-tggtcccttccta-cactccgatggctctttgatgtgggaatcttgatgatgc 123
|||||| ||||||||| | || ||| || || |||||| ||||||||||||||||||
Sbjct: 66 cttttggtggtccctttttttcaatccaatagccctttgaattgggaatcttgatgatgc 125
Query: 124 tgcagcggcaa 134
|||||||||||
Sbjct: 126 tgcagcggcaa 136
>52375_ptc-miRf10553-akr:pmrd
Length = 136
Score = 65.9 bits (33), Expect = 7e-12
Identities = 110/131 (83%), Gaps = 6/131 (4%)
Strand = Plus / Plus
Query: 9 atggagcatcatcaagattcacaag---tattgagactcagtgcgtggtggtgatggtga 65
||||||||||||||||||||||||| |||| | || |||| |||||| ||||||||
Sbjct: 7 atggagcatcatcaagattcacaagctttattagggct-agtgtgtggtgatgatggtgg 65
Query: 66 cttttg-tggtcccttccta-cactccgatggctctttgatgtgggaatcttgatgatgc 123
|||||| ||||||||| | || ||| || || |||||| ||||||||||||||||||
Sbjct: 66 cttttggtggtccctttttttcaatccaatagccctttgaattgggaatcttgatgatgc 125
Query: 124 tgcagcggcaa 134
|||||||||||
Sbjct: 126 tgcagcggcaa 136
>51948_ptc-miRf10126-akr:pmrd
Length = 152
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaataaa 138
|||||||||||||||||||||||||||||||||
Sbjct: 116 tgggaatcttgatgatgctgcagcggcaataaa 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaa 32
|||||| ||||||||| |||||||||||||||
Sbjct: 7 gtttgccgatggagcaccatcaagattcacaa 38
>51705_ptc-miR172h:pmrd
Length = 143
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaataa 137
||||||||||||||||||||||||||||||||
Sbjct: 112 tgggaatcttgatgatgctgcagcggcaataa 143
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcacaa 32
|||||| ||||||||| |||||||||||||||
Sbjct: 3 gtttgccgatggagcaccatcaagattcacaa 34
>51903_ptc-miRf10081-akr:pmrd
Length = 147
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 6 gtttgcgggtggagcatcatcaagattcaca 36
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| ||||||||||
Sbjct: 115 gaatcttgatgatgctgcatcggcaataaa 144
>51699_ptc-miR172b:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 3 gtttgcgggtggagcatcatcaagattcaca 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataa 137
||||||||||||||||||| |||||||||
Sbjct: 112 gaatcttgatgatgctgcatcggcaataa 140
>51344_ppd-miR172b:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 137 gtttgcgggtggagcatcatcaagattcaca 107
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 109 gaatcttgatgatgctgcagcggcaata 136
||||||||||||||||||| ||||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
>51343_ppd-miR172a:pmrd
Length = 139
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
|||||||| ||||||||||||||||||||||
Sbjct: 1 gtttgcgggtggagcatcatcaagattcaca 31
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataaa 138
||||||||||||||||||| ||||||||||
Sbjct: 110 gaatcttgatgatgctgcatcggcaataaa 139
>48571_gma-miR172b:pmrd
Length = 153
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
||||||||||| |||||||||||||||||||
Sbjct: 13 gtttgcggatgtagcatcatcaagattcaca 43
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 99 tttgatgtgggaatcttgatgatgctgca 127
||||||||| |||||||||||||||||||
Sbjct: 105 tttgatgtgagaatcttgatgatgctgca 133
>46987_ath-miR172d:pmrd
Length = 124
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
|||||||||||||||||||||||||||
Sbjct: 89 gaatcttgatgatgctgcagcggcaat 115
>48570_gma-miR172a:pmrd
Length = 159
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tttgcggatggagcatcatcaagattcaca 31
|||||||||| |||||||||||||||||||
Sbjct: 14 tttgcggatgtagcatcatcaagattcaca 43
>53739_ptc-miRf11917-akr:pmrd
Length = 143
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 106 tgggaatcttgatgatgctgcatcggcaa 134
>52845_ptc-miRf11023-akr:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 ttgcggatggagcatcatcaagattcaca 31
|||||| ||||||||||||||||||||||
Sbjct: 1 ttgcgggtggagcatcatcaagattcaca 29
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaa 134
||||||||||||||||||| ||||||
Sbjct: 108 gaatcttgatgatgctgcatcggcaa 133
>52835_ptc-miRf11013-akr:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 34 tgggaatcttgatgatgctgcatcggcaa 6
>52315_ptc-miRf10493-akr:pmrd
Length = 141
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 105 tgggaatcttgatgatgctgcatcggcaa 133
>51901_ptc-miRf10079-akr:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 32 tgggaatcttgatgatgctgcatcggcaa 4
>51703_ptc-miR172f:pmrd
Length = 161
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaataa 137
||||||||||||||||||| |||||||||
Sbjct: 133 gaatcttgatgatgctgcatcggcaataa 161
>51702_ptc-miR172e:pmrd
Length = 133
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 102 tgggaatcttgatgatgctgcatcggcaa 130
>51701_ptc-miR172d:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgcagcggcaa 134
|||||||||||||||||||||| ||||||
Sbjct: 151 tgggaatcttgatgatgctgcatcggcaa 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 5 gcggatggagcatcatcaagattcacaag 33
||||||| ||||||||||||||||||||
Sbjct: 7 gcggatgcggcatcatcaagattcacaag 35
>55045_zma-miR172f:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 111 tgtgggaatcttgatgatgctgca 134
>55044_zma-miR172e:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 131 tgtgggaatcttgatgatgctgca 154
>54838_vvi-miR172b:pmrd
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 109 gaatcttgatgatgctgcagcggcaata 136
||||||||||||||||||| ||||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
>54837_vvi-miR172a:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 109 gaatcttgatgatgctgcagcggcaata 136
||||||||||||||||||| ||||||||
Sbjct: 28 gaatcttgatgatgctgcatcggcaata 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 gtttgcggatggagcatcatcaagattcaca 31
||||||| ||| |||||||||||||||||||
Sbjct: 108 gtttgcgcatgtagcatcatcaagattcaca 78
>54464_sbi-miR172b:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 146 tgtgggaatcttgatgatgctgca 169
>48907_osa-miR172b:pmrd
Length = 238
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
||||||||||||||||||||||||
Sbjct: 204 tgtgggaatcttgatgatgctgca 227
>48151_ath-miRf11051-akr:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcacaa 32
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||||| |||||
Sbjct: 99 gaatcttgatgatgctgcagctgcaat 125
>48133_ath-miRf11033-akr:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||| |||||||
Sbjct: 88 gaatcttgatgatgctgcatcggcaat 114
>47855_ath-miRf10755-akr:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||||| |||||
Sbjct: 35 gaatcttgatgatgctgcagctgcaat 9
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tggagcatcatcaagattcacaa 32
|||||||||||||||||||||||
Sbjct: 117 tggagcatcatcaagattcacaa 95
>47734_ath-miRf10634-akr:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 105 gtgggaatcttgatgatgctgca 127
|||||||||||||||||||||||
Sbjct: 41 gtgggaatcttgatgatgctgca 19
>47545_ath-miRf10445-akr:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcacaa 32
|||||||||||||||||||||||
Sbjct: 16 tggagcatcatcaagattcacaa 38
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||||| |||||
Sbjct: 98 gaatcttgatgatgctgcagctgcaat 124
>47531_ath-miRf10431-akr:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||| |||||||
Sbjct: 92 gaatcttgatgatgctgcatcggcaat 118
>46988_ath-miR172e:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gtgggaatcttgatgatgctgca 127
|||||||||||||||||||||||
Sbjct: 92 gtgggaatcttgatgatgctgca 114
>46986_ath-miR172c:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tggagcatcatcaagattcacaa 32
|||||||||||||||||||||||
Sbjct: 17 tggagcatcatcaagattcacaa 39
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaat 135
||||||||||||||||||||| |||||
Sbjct: 99 gaatcttgatgatgctgcagctgcaat 125
>48693_mes-miR172:pmrd
Length = 146
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggcaa 134
||||||||||||||||||| ||||||
Sbjct: 117 gaatcttgatgatgctgcatcggcaa 142
>46883_aqc-miR172b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tgggaatcttgatgatgctgca 127
||||||||||||||||||||||
Sbjct: 84 tgggaatcttgatgatgctgca 105
>48906_osa-miR172a:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 4 tgcggatggagcatcatcaagattc 28
|||||||| ||||||||||||||||
Sbjct: 104 tgcggatgcagcatcatcaagattc 80
>54840_vvi-miR172d:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 gatggagcatcatcaagattcaca 31
|||| |||||||||||||||||||
Sbjct: 8 gatgcagcatcatcaagattcaca 31
>54467_sbi-miR172e:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 104 tgtgggaatcttgatgatgctgca 127
|||| |||||||||||||||||||
Sbjct: 72 tgtgtgaatcttgatgatgctgca 95
>54466_sbi-miR172d:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 gtttgcggatggagcatcatcaagattc 28
|||||| |||| ||||||||||||||||
Sbjct: 101 gtttgctgatgcagcatcatcaagattc 74
>49516_osa-miRf10301-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 gtttgcggatggagcatcatcaagattc 28
|||||| |||| ||||||||||||||||
Sbjct: 115 gtttgctgatgcagcatcatcaagattc 88
>48909_osa-miR172d:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1 gtttgcggatggagcatcatcaagattc 28
|||||| |||| ||||||||||||||||
Sbjct: 119 gtttgctgatgcagcatcatcaagattc 92
>46983_ath-miR172a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 109 gaatcttgatgatgctgcagcggc 132
||||||||||||||||||| ||||
Sbjct: 79 gaatcttgatgatgctgcatcggc 102
